RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TSPY3P0CV98 308 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 TSPY8P0CW00 308 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 CTDSPL2Q05D32 466 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 ORC2Q13416 577 aaPredicted RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 SEC23AQ15436 765 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 CCDC93Q567U6 631 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 ADALQ6DHV7 355 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 MCTP2Q6DN12 878 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 C16orf86Q6ZW13 317 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 ELOA2Q8IYF1 753 aaPredicted RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 GPT2Q8TD30 523 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 DDX11Q96FC9 970 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 PSMD1Q99460 953 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 NAT10Q9H0A0 1025 aaKnown RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 GZF1Q9H116 711 aaPredicted RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 GLT8D2Q9H1C3 349 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 MKRN1Q9UHC7 482 aaKnown RBP8.69□□□□□ -1.02
VPS39-204ENST00000561818 CNPY2Q9Y2B0 182 aa8.69□□□□□ -1.02
VPS39-204ENST00000561818 DLEC1Q9Y238 1755 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 ANKRD31Q8N7Z5 1873 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 NAV1Q8NEY1 1877 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 PRPF3O43395 683 aaKnown RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 PRKAB2O43741 272 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 POLD1P28340 1107 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 TGFB2P61812 414 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 KIF23Q02241 960 aaPredicted RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 FAM160A1Q05DH4 1040 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 KIAA2012Q0VF49 1180 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 SEMA3FQ13275 785 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 STK38Q15208 465 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 SLFNL1Q499Z3 407 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 FOXD4L5Q5VV16 416 aaPredicted RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 MYSM1Q5VVJ2 828 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 RCSD1Q6JBY9 416 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 ADGRA1Q86SQ6 560 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 CRACR2BQ8N4Y2 399 aaPredicted RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 ENAHQ8N8S7 591 aaPredicted RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 FOXD4L4Q8WXT5 416 aaPredicted RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 ZNF622Q969S3 477 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS39-204ENST00000561818 ZDHHC15Q96MV8 337 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 LARP6Q9BRS8 491 aaKnown RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 TNMDQ9H2S6 317 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 NCOA5Q9HCD5 579 aaKnown RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 TMOD2Q9NZR1 351 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 POLLQ9UGP5 575 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 HDAC9Q9UKV0 1011 aa8.68□□□□□ -1.02
VPS39-204ENST00000561818 MYO5AQ9Y4I1 1855 aaKnown RBP8.68□□□□□ -1.02
VPS39-204ENST00000561818 USP17L3A6NCW0 530 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 USP17L4A6NCW7 530 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 MMP1P03956 469 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TPM3P06753 285 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TOP1P11387 765 aaKnown RBP8.67□□□□□ -1.02
VPS39-204ENST00000561818 FLT1P17948 1338 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 KLRK1P26718 216 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 ME1P48163 572 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TPM4P67936 248 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 NTRK3Q16288 839 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 KANK3Q6NY19 840 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 SASS6Q6UVJ0 657 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TMTC3Q6ZXV5 915 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 CHST3Q7LGC8 479 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 USP17L1Q7RTZ2 530 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 NOSTRINQ8IVI9 506 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TTLL6Q8N841 843 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 NEDD1Q8NHV4 660 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 MRPS27Q92552 414 aaKnown RBP8.67□□□□□ -1.02
VPS39-204ENST00000561818 TIGD1Q96MW7 591 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 SLC26A6Q9BXS9 759 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 TRIM34Q9BYJ4 488 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 GTPBP4Q9BZE4 634 aaKnown RBP8.67□□□□□ -1.02
VPS39-204ENST00000561818 USP25Q9UHP3 1055 aa8.67□□□□□ -1.02
VPS39-204ENST00000561818 MYH2Q9UKX2 1941 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 DDX60LQ5H9U9 1706 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 COL4A1P02462 1669 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 GOLGA6L6A8MZA4 724 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 LAD1O00515 517 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 SPTLC2O15270 562 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 MYO1BO43795 1136 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 FDPSP14324 419 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 HOXA7P31268 230 aaPredicted RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 KRT2P35908 639 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 DYNLL1P63167 89 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 GTF2IP78347 998 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 TROAPQ12815 778 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 SLC39A14Q15043 492 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 ASPRV1Q53RT3 343 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 GPATCH4Q5T3I0 446 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 FKBP1CQ5VVH2 108 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 ANO1Q5XXA6 986 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 KRT40Q6A162 431 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 PPP1R18Q6NYC8 613 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 RBM43Q6ZSC3 357 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 FERMT3Q86UX7 667 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 OGFOD1Q8N543 542 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 ZNF579Q8NAF0 562 aaKnown RBP8.66□□□□□ -1.02
VPS39-204ENST00000561818 LINC00301Q8NCQ3 95 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 ZNF384Q8TF68 577 aa8.66□□□□□ -1.02
VPS39-204ENST00000561818 NUP133Q8WUM0 1156 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms