RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 GH2P01242 217 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 CCL5P13501 91 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 ELNP15502 786 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 PLCD1P51178 756 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 PABPC4Q13310 644 aaKnown RBP eCLIP12.41□□□□□ -0.427e-10■□□□□ 8.1
LDLR-214ENST00000560628 SLFNL1Q499Z3 407 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 RIOK1Q9BRS2 568 aaKnown RBP12.41□□□□□ -0.42
LDLR-214ENST00000560628 PHIPQ8WWQ0 1821 aa12.41□□□□□ -0.42
LDLR-214ENST00000560628 ZNF532Q9HCE3 1301 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 C19orf81C9J6K1 198 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 USP17L10C9JJH3 530 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 SMARCA5O60264 1052 aaPredicted RBP12.4□□□□□ -0.42
LDLR-214ENST00000560628 PEX10O60683 326 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 POLR3DP05423 398 aaPredicted RBP12.4□□□□□ -0.42
LDLR-214ENST00000560628 GCLCP48506 637 aaPredicted RBP12.4□□□□□ -0.42
LDLR-214ENST00000560628 IRX3P78415 501 aaPredicted RBP12.4□□□□□ -0.42
LDLR-214ENST00000560628 PDE3AQ14432 1141 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 FAM110CQ1W6H9 321 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 TTC6Q86TZ1 520 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 CERS3Q8IU89 383 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.4□□□□□ -0.42
LDLR-214ENST00000560628 COA7Q96BR5 231 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 P2RX7Q99572 595 aaKnown RBP12.4□□□□□ -0.42
LDLR-214ENST00000560628 RNF208Q9H0X6 261 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 SERPINB13Q9UIV8 391 aa12.4□□□□□ -0.42
LDLR-214ENST00000560628 TCRBV5S4A2TA0A5A2 114 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 UBXN2AP68543 259 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 EVX2Q03828 476 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 RAB3GAP1Q15042 981 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 ZYXQ15942 572 aaKnown RBP12.39□□□□□ -0.43
LDLR-214ENST00000560628 CERKLQ49MI3 558 aaPredicted RBP12.39□□□□□ -0.43
LDLR-214ENST00000560628 TATDN1Q6P1N9 297 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 TMED8Q6PL24 325 aaPredicted RBP12.39□□□□□ -0.43
LDLR-214ENST00000560628 SLAIN1Q8ND83 568 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 CRNKL1Q9BZJ0 848 aaKnown RBP12.39□□□□□ -0.43
LDLR-214ENST00000560628 UNC93B1Q9H1C4 597 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 EMILIN3Q9NT22 766 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 GINM1Q9NU53 330 aa12.39□□□□□ -0.43
LDLR-214ENST00000560628 SLC34A2O95436 690 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 CHGBP05060 677 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 GJB1P08034 283 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 ATP5JP18859 108 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 HOXA7P31268 230 aaPredicted RBP12.38□□□□□ -0.43
LDLR-214ENST00000560628 ABCB5Q2M3G0 1257 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 USP17L2Q6R6M4 530 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 LCORLQ8N3X6 602 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 SDR42E1Q8WUS8 393 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 SHISA4Q96DD7 197 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 LRRCC1Q9C099 1032 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 EHD4Q9H223 541 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 ARMT1Q9H993 441 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 PAG1Q9NWQ8 432 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 MCM9Q9NXL9 1143 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 SIPA1L1O43166 1804 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 PTPRFP10586 1907 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 CENPFP49454 3210 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 MAST2Q6P0Q8 1798 aa12.38□□□□□ -0.43
LDLR-214ENST00000560628 PRKAB2O43741 272 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 INHAP05111 366 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 CYP2D6P10635 497 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 SHMT1P34896 483 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 GJA8P48165 433 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 HERVK_113P62684 666 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 IRF5Q13568 498 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 ACER1Q8TDN7 264 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 PXYLP1Q8TE99 480 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 FEZ1Q99689 392 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 HAUS7Q99871 368 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 TXNRD2Q9NNW7 524 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 CABP5Q9NP86 173 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 RBPJLQ9UBG7 517 aa12.37□□□□□ -0.43
LDLR-214ENST00000560628 CDK5RAP2Q96SN8 1893 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 MBD4O95243 580 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 ADD2P35612 726 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 Q3C1V9 767 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 GPRC5AQ8NFJ5 357 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 NKX2-3Q8TAU0 364 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 PAGR1Q9BTK6 254 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 DCP1AQ9NPI6 582 aaPredicted RBP12.36□□□□□ -0.43
LDLR-214ENST00000560628 MORF4L1Q9UBU8 362 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 GJD2Q9UKL4 321 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 ATAD5Q96QE3 1844 aa12.36□□□□□ -0.43
LDLR-214ENST00000560628 MPHOSPH10O00566 681 aaKnown RBP12.35□□□□□ -0.43
LDLR-214ENST00000560628 SGPL1O95470 568 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 TFRCP02786 760 aaKnown RBP12.35□□□□□ -0.43
LDLR-214ENST00000560628 GUCY1A2P33402 732 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 GABPAQ06546 454 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 SEPT2Q15019 361 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 POTEEQ6S8J3 1075 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 SLC44A5Q8NCS7 719 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 U2AF1L4Q8WU68 220 aaKnown RBP12.35□□□□□ -0.43
LDLR-214ENST00000560628 DPF3Q92784 378 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 DYNLL2Q96FJ2 89 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 DEFB118Q96PH6 123 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.35□□□□□ -0.431e-8■■□□□ 12.1
LDLR-214ENST00000560628 DOCK3Q8IZD9 2030 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 MYH1P12882 1939 aa12.35□□□□□ -0.43
LDLR-214ENST00000560628 MGAMO43451 1857 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 RBBP6Q7Z6E9 1792 aaKnown RBP12.34□□□□□ -0.43
LDLR-214ENST00000560628 CYP2D7A0A087X1C5 515 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms