RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 AATFQ9NY61 560 aaKnown RBP eCLIP12.77□□□□□ -0.36
SPG11-217ENST00000559511 DEXIO95424 95 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 TPM2P07951 284 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 FGRP09769 529 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 TOB1P50616 345 aaPredicted RBP12.77□□□□□ -0.37
SPG11-217ENST00000559511 TERF1P54274 439 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 DPCR1Q3MIW9 517 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 SARM1Q6SZW1 724 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 DRC7Q8IY82 874 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 CEP57L1Q8IYX8 460 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 CLIC6Q96NY7 704 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 ZSCAN10Q96SZ4 725 aaPredicted RBP12.77□□□□□ -0.37
SPG11-217ENST00000559511 HPSEQ9Y251 543 aa12.77□□□□□ -0.37
SPG11-217ENST00000559511 CCDC196A0A1B0GTZ2 297 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 BECN2A8MW95 431 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 USP17L12C9JPN9 530 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 USP17L21D6R901 530 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 APBA3O96018 575 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 GPSM2P81274 684 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 DIS3L2Q8IYB7 885 aaKnown RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 AOPEPQ8N6M6 819 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 AKT1S1Q96B36 256 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 RBM17Q96I25 401 aaKnown RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 RGPD3A6NKT7 1758 aaPredicted RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 RGPD4Q7Z3J3 1758 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 SLC3A2P08195 630 aaKnown RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 HMGB2P26583 209 aaKnown RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 SYKP43405 635 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 JMYQ8N9B5 988 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 SHISA4Q96DD7 197 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 GPR101Q96P66 508 aaPredicted RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 DCP1AQ9NPI6 582 aaPredicted RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.76□□□□□ -0.37
SPG11-217ENST00000559511 CLIP2Q9UDT6 1046 aa12.76□□□□□ -0.37
SPG11-217ENST00000559511 FAM237AA0A1B0GTK4 181 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 KLRG2A4D1S0 409 aaPredicted RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 BIN1O00499 593 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 COL11A2P13942 1736 aaPredicted RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 CDC25BP30305 580 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 HOXA10P31260 410 aaPredicted RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 LRMPQ12912 555 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 NR5A1Q13285 461 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 SAFBQ15424 915 aaKnown RBP eCLIP12.75□□□□□ -0.37
SPG11-217ENST00000559511 CCDC144BQ3MJ40 725 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 RESP18Q5W5W9 173 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 C15orf52Q6ZUT6 534 aaKnown RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 COL23A1Q86Y22 540 aaPredicted RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 OXER1Q8TDS5 423 aa12.75□□□□□ -0.37
SPG11-217ENST00000559511 FOXP1Q9H334 677 aaPredicted RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.75□□□□□ -0.37
SPG11-217ENST00000559511 BAZ2BQ9UIF8 2168 aaKnown RBP12.75□□□□□ -0.37
SPG11-217ENST00000559511 FUT2Q10981 343 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 IFIT1BQ5T764 474 aaKnown RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 TIGD1Q96MW7 591 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 NAT10Q9H0A0 1025 aaKnown RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 NMT2O60551 498 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 CUTAO60888 179 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 PLEKHA8P1O95397 391 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 CYP2D6P10635 497 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 PCP11498 1178 aaKnown RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 DNTTIP2Q5QJE6 756 aaKnown RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 MRFAP1L1Q96HT8 127 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 CRAMP1Q96RY5 1269 aa12.74□□□□□ -0.37
SPG11-217ENST00000559511 RNF26Q9BY78 433 aaPredicted RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 CRNKL1Q9BZJ0 848 aaKnown RBP12.74□□□□□ -0.37
SPG11-217ENST00000559511 NAV1Q8NEY1 1877 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 BBOX1O75936 387 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 UFL1O94874 794 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 NLRP12P59046 1061 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 TROAPQ12815 778 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 PKN1Q16512 942 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 ZNF804AQ7Z570 1209 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 CATIPQ7Z7H3 387 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 IQCA1Q86XH1 822 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 BPIFA3Q9BQP9 254 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 UQCRHLA0A096LP55 91 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 hCG_1642624A0A1W2PR95 340 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 ORC4O43929 436 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 UQCRHP07919 91 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 ATP2B4P23634 1241 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 RXRBP28702 533 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 GRIN1Q05586 938 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 PPP2R5BQ15173 497 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 ZRSR1Q15695 479 aaKnown RBP12.73□□□□□ -0.37
SPG11-217ENST00000559511 FAM47AQ5JRC9 791 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 SPECC1Q5M775 1068 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 SPTY2D1Q68D10 685 aaPredicted RBP12.73□□□□□ -0.37
SPG11-217ENST00000559511 NLGN1Q8N2Q7 840 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 KRI1Q8N9T8 703 aaKnown RBP12.73□□□□□ -0.37
SPG11-217ENST00000559511 WDR66Q8TBY9 1149 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 CACTINQ8WUQ7 758 aaKnown RBP12.73□□□□□ -0.37
SPG11-217ENST00000559511 ATP8A2Q9NTI2 1148 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 VPS54Q9P1Q0 977 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 PCDHB6Q9Y5E3 794 aa12.73□□□□□ -0.37
SPG11-217ENST00000559511 PNOCQ13519 176 aa12.72□□□□□ -0.37
SPG11-217ENST00000559511 RILPL1Q5EBL4 403 aa12.72□□□□□ -0.37
SPG11-217ENST00000559511 ISM2Q6H9L7 571 aa12.72□□□□□ -0.37
SPG11-217ENST00000559511 TMED8Q6PL24 325 aaPredicted RBP12.72□□□□□ -0.37
SPG11-217ENST00000559511 DZIP1Q86YF9 867 aaKnown RBP12.72□□□□□ -0.37
SPG11-217ENST00000559511 TUBE1Q9UJT0 475 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms