RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 OTUD7AQ8TE49 926 aaPredicted RBP24.81■■□□□ 1.56
CCDC88C-210ENST00000555995 FSD1Q9BTV5 496 aa24.81■■□□□ 1.56
CCDC88C-210ENST00000555995 SWAP70Q9UH65 585 aa24.81■■□□□ 1.56
CCDC88C-210ENST00000555995 PNMA3Q9UL41 463 aa24.81■■□□□ 1.56
CCDC88C-210ENST00000555995 GNAT2P19087 354 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 SPP2Q13103 211 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 KIF22Q14807 665 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 PUS7LQ9H0K6 701 aaKnown RBP24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 CABP5Q9NP86 173 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 AGTPBP1Q9UPW5 1226 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 SLC4A4Q9Y6R1 1079 aa24.8■■□□□ 1.56
CCDC88C-210ENST00000555995 GDF11O95390 407 aa24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 PDE1AP54750 535 aa24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 RRP1BQ14684 758 aaKnown RBP24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 CERKLQ49MI3 558 aaPredicted RBP24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 GIMAP6Q6P9H5 292 aa24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 ARPP21Q9UBL0 812 aaPredicted RBP24.79■■□□□ 1.56
CCDC88C-210ENST00000555995 C19orf81C9J6K1 198 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 PLCD1P51178 756 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 SH3D19Q5HYK7 790 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 GPAT2Q6NUI2 795 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 FBXO46Q6PJ61 603 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 EVI5LQ96CN4 794 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 LNPKQ9C0E8 428 aa24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-210ENST00000555995 GABPAQ06546 454 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 ABCB5Q2M3G0 1257 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 SLFNL1Q499Z3 407 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 CCDC84Q86UT8 332 aaPredicted RBP24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 CHD1LQ86WJ1 897 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 CD99L2Q8TCZ2 262 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 TMOD4Q9NZQ9 345 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 TRIM17Q9Y577 477 aa24.77■■□□□ 1.56
CCDC88C-210ENST00000555995 USP17L10C9JJH3 530 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 PRKAB2O43741 272 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 CAPN15O75808 1086 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 GNRH1P01148 92 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 GH2P01242 217 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 HMGCS2P54868 508 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 BACE1P56817 501 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 NUCB1Q02818 461 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 STRBPQ96SI9 672 aaKnown RBP24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 EFCC1Q9HA90 598 aa24.76■■□□□ 1.55
CCDC88C-210ENST00000555995 IGHDP01880 384 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 SHMT1P34896 483 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 C17orf99Q6UX52 265 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 OTOP1Q7RTM1 612 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 OSBP2Q969R2 916 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 ADGRA2Q96PE1 1338 aa24.75■■□□□ 1.55
CCDC88C-210ENST00000555995 GPAA1O43292 621 aa24.74■■□□□ 1.55
CCDC88C-210ENST00000555995 MTMR2Q13614 643 aa24.74■■□□□ 1.55
CCDC88C-210ENST00000555995 C12orf60Q5U649 245 aa24.74■■□□□ 1.55
CCDC88C-210ENST00000555995 B4GALNT3Q6L9W6 998 aa24.74■■□□□ 1.55
CCDC88C-210ENST00000555995 SMCR8Q8TEV9 937 aaPredicted RBP24.74■■□□□ 1.55
CCDC88C-210ENST00000555995 USP17L12C9JPN9 530 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 USP17L21D6R901 530 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 CHGBP05060 677 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 OSBPP22059 807 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 USP14P54578 494 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 LACTBP83111 547 aaPredicted RBP24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 CCDC17Q96LX7 622 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 FEZ1Q99689 392 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 NACAP1Q9BZK3 213 aa24.73■■□□□ 1.55
CCDC88C-210ENST00000555995 PRMT2P55345 433 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 RAB3GAP1Q15042 981 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 SBK1Q52WX2 424 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 ZMYM1Q5SVZ6 1142 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 TMEM179Q6ZVK1 233 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 CPA4Q9UI42 421 aa24.72■■□□□ 1.55
CCDC88C-210ENST00000555995 CCDC85CA6NKD9 419 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 CYP2C8P10632 490 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 JAG1P78504 1218 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 USP17L2Q6R6M4 530 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 C16orf86Q6ZW13 317 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 OSBPL3Q9H4L5 887 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 HPS5Q9UPZ3 1129 aa24.71■■□□□ 1.55
CCDC88C-210ENST00000555995 GSG1L2A8MUP6 293 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 CYP2D6P10635 497 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 BCRP11274 1271 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 GCLCP48506 637 aaPredicted RBP24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 TDO2P48775 406 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 TREML2Q5T2D2 321 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 CTR9Q6PD62 1173 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 ZNF287Q9HBT7 754 aa24.7■■□□□ 1.54
CCDC88C-210ENST00000555995 ROBO3Q96MS0 1386 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 MGAMO43451 1857 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 M0R2C6 588 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 MPHOSPH10O00566 681 aaKnown RBP24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 IRX3P78415 501 aaPredicted RBP24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 GTF3C2Q8WUA4 911 aaPredicted RBP24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 C12orf42Q96LP6 360 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 KIAA1683Q9H0B3 1180 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 PTPN22Q9Y2R2 807 aa24.69■■□□□ 1.54
CCDC88C-210ENST00000555995 PATL2C9JE40 543 aaKnown RBP24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 APPP05067 770 aa24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 HOXD10P28358 340 aa24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 HOXA7P31268 230 aaPredicted RBP24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 IRX6P78412 446 aaPredicted RBP24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 SH2D4AQ9H788 454 aa24.68■■□□□ 1.54
CCDC88C-210ENST00000555995 TRIM6-TRIM34B2RNG4 842 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms