RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	STK11IP	Q8N1F8	1099 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	TRIML1	Q8N9V2	468 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	SPATA20	Q8TB22	786 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	SDR42E1	Q8WUS8	393 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	FAM163A	Q96GL9	167 aa	Predicted RBP	10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	SH3GLB2	Q9NR46	395 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	PODXL2	Q9NZ53	605 aa		10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	FBXO2	Q9UK22	296 aa	Predicted RBP	10.63	□□□□□ -0.71
PRKCH-209	ENST00000553889	TAF1	P21675	1872 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	BTBD18	B2RXH4	712 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	USP17L12	C9JPN9	530 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	USP17L21	D6R901	530 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	PPFIA3	O75145	1194 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	GUCY1A2	P33402	732 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	SARS	P49591	514 aa	Known RBP	10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	DYNLL1	P63167	89 aa	Known RBP	10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	TPM4	P67936	248 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	PIP4K2B	P78356	416 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	PDE4B	Q07343	736 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	NFIX	Q14938	502 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	NCAPH	Q15003	741 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	IFIT1B	Q5T764	474 aa	Known RBP	10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	C12orf60	Q5U649	245 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	PTF1A	Q7RTS3	328 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	CCDC186	Q7Z3E2	898 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	RAB11FIP4	Q86YS3	637 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	MYRIP	Q8NFW9	859 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	TNFRSF25	Q93038	417 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	CLIP2	Q9UDT6	1046 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	HOOK1	Q9UJC3	728 aa	Known RBP	10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	KCNH3	Q9ULD8	1083 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	MYH2	Q9UKX2	1941 aa		10.62	□□□□□ -0.71
PRKCH-209	ENST00000553889	UBR3	Q6ZT12	1888 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889		A0A0G2JS52	829 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	WTIP	A6NIX2	430 aa	Predicted RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	MINDY4B	A8MYZ0	360 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	BBOX1	O75936	387 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	IL1R1	P14778	569 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	RXRA	P19793	462 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	PTGS1	P23219	599 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	ATP2B4	P23634	1241 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	RFC4	P35249	363 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	AKAP17A	Q02040	695 aa	Known RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	SEMA3F	Q13275	785 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	ZRSR1	Q15695	479 aa	Known RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	TPRN	Q4KMQ1	711 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	RCSD1	Q6JBY9	416 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	ZNF804A	Q7Z570	1209 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	LRRC8A	Q8IWT6	810 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	FERMT2	Q96AC1	680 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	CRAMP1	Q96RY5	1269 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	MYL10	Q9BUA6	226 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	FAM13B	Q9NYF5	915 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	PYCARD	Q9ULZ3	195 aa		10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.61	□□□□□ -0.71
PRKCH-209	ENST00000553889	CNTNAP5	Q8WYK1	1306 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	MYH6	P13533	1939 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	TRIM75P	A6NK02	468 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	TUBB4A	P04350	444 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	KLRK1	P26718	216 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	SMARCA1	P28370	1054 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	MARCKS	P29966	332 aa	Predicted RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	PRDX5	P30044	214 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	KIF5B	P33176	963 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	NOV	P48745	357 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	GNAQ	P50148	359 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	PLCB2	Q00722	1185 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	NPY5R	Q15761	445 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	DPCR1	Q3MIW9	517 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	RRP12	Q5JTH9	1297 aa	Known RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	GALNT17	Q6IS24	598 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	BICDL1	Q6ZP65	573 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	SH3RF1	Q7Z6J0	888 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	MTERF4	Q7Z6M4	381 aa	Known RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	METTL16	Q86W50	562 aa	Known RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	AOPEP	Q8N6M6	819 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	CNBD1	Q8NA66	436 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	ZNF830	Q96NB3	372 aa	Predicted RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	PYM1	Q9BRP8	204 aa	Known RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	BRMS1	Q9HCU9	246 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	TOMM22	Q9NS69	142 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	SUGT1	Q9Y2Z0	365 aa		10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	BAZ2A	Q9UIF9	1905 aa	Known RBP	10.6	□□□□□ -0.71
PRKCH-209	ENST00000553889	LRRC37A	A6NMS7	1700 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	RRP9	O43818	475 aa	Known RBP	10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	BAG3	O95817	575 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	LDHB	P07195	334 aa	Known RBP	10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	PLCG2	P16885	1265 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	CALML3	P27482	149 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	KRT2	P35908	639 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	MYL5	Q02045	173 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	PRR5L	Q6MZQ0	368 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	TXNRD3	Q86VQ6	643 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	AMIGO3	Q86WK7	504 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	CCDC144CP	Q8IYA2	1237 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	MLKL	Q8NB16	471 aa		10.59	□□□□□ -0.71
PRKCH-209	ENST00000553889	SPC24	Q8NBT2	197 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms