RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 BRWD3Q6RI45 1802 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 PATL2C9JE40 543 aaKnown RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 C6orf229H3BNL8 230 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 ZNF213O14771 459 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 GPAA1O43292 621 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 PDE6AP16499 860 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 HMGN5P82970 282 aaKnown RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 MAP3K12Q12852 859 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 MAP2K5Q13163 448 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 WASHC4Q2M389 1173 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 ERFEQ4G0M1 354 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 TBC1D9BQ66K14 1250 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 ZNF385CQ66K41 422 aaPredicted RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 TPTE2Q6XPS3 522 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 USP48Q86UV5 1035 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 ANKRD18AQ8IVF6 992 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 NECAB1Q8N987 351 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 ITPKCQ96DU7 683 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 STRBPQ96SI9 672 aaKnown RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 SETDB2Q96T68 719 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 MTA3Q9BTC8 594 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 PIH1D3Q9NQM4 214 aaKnown RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 DNMT3LQ9UJW3 386 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 MINPP1Q9UNW1 487 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 RTCBQ9Y3I0 505 aaKnown RBP7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 MYH2Q9UKX2 1941 aa7.09□□□□□ -1.27
VIPAS39-204ENST00000553576 CACNA1SQ13698 1873 aa7.09□□□□□ -1.28
VIPAS39-204ENST00000553576 CARMIL3Q8ND23 1372 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 ELP1O95163 1332 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 PNPLA7Q6ZV29 1317 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 ZNF532Q9HCE3 1301 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 SALL1Q9NSC2 1324 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 MYH6P13533 1939 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 LETM1O95202 739 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 FDX1P10109 184 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 GNAT2P19087 354 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 NCLP19338 710 aaKnown RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 PDIA3P30101 505 aaKnown RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 TM4SF1P30408 202 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 MCM5P33992 734 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 RPS8P62241 208 aaKnown RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 UBE2HP62256 183 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 SCRN1Q12765 414 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 ZSCAN23Q3MJ62 389 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 ATL3Q6DD88 541 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 LRSAM1Q6UWE0 723 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 PI16Q6UXB8 463 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 PTF1AQ7RTS3 328 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 FBXO33Q7Z6M2 555 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 MB21D2Q8IYB1 491 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 HELBQ8NG08 1087 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 NCOA7Q8NI08 942 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM174AQ8TBP5 190 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 BRF1Q92994 677 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 SYAP1Q96A49 352 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 TCEANC2Q96MN5 208 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 NLRP3Q96P20 1036 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 CDK15Q96Q40 435 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 ZSCAN16Q9H4T2 348 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 GNL3LQ9NVN8 582 aaKnown RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 TMEM63CQ9P1W3 806 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 CCNL1Q9UK58 526 aaPredicted RBP7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 KIF3AQ9Y496 699 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 COL4A1P02462 1669 aa7.08□□□□□ -1.28
VIPAS39-204ENST00000553576 AFF2P51816 1311 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 CTDNEP1O95476 244 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 BMP2P12643 396 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 IRS1P35568 1242 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 RASGRF1Q13972 1273 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 TRAPPC3LQ5T215 181 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 TTLL5Q6EMB2 1281 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 NAA16Q6N069 864 aaPredicted RBP7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 CAVIN1Q6NZI2 390 aaKnown RBP7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 LINC00528Q8N1L1 170 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 SVOPQ8N4V2 548 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 NSUN7Q8NE18 718 aaKnown RBP7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 ANKRD2Q9GZV1 360 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 SCAND2PQ9GZW5 306 aaPredicted RBP7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 WWC3Q9ULE0 1092 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 DENND2AQ9ULE3 1009 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 NSFL1CQ9UNZ2 370 aaKnown RBP7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 TIAM2Q8IVF5 1701 aa7.07□□□□□ -1.28
VIPAS39-204ENST00000553576 BAZ2AQ9UIF9 1905 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 A0A0G2JLW4 131 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM177BA6PVY3 158 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 GSG1L2A8MUP6 293 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 DHX16O60231 1041 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 IDH1O75874 414 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 NR3C2P08235 984 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 GTF2E1P29083 439 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 HSPA1LP34931 641 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 LIFRP42702 1097 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 KRT85P78386 507 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FGD1P98174 961 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 DNM1Q05193 864 aaKnown RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 APOBRQ0VD83 1088 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 CAVIN4Q5BKX8 364 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 SLC27A3Q5K4L6 730 aa7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FOXD4L5Q5VV16 416 aaPredicted RBP7.06□□□□□ -1.28
VIPAS39-204ENST00000553576 FAM196AQ6ZSG2 479 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms