RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 RRP1BQ14684 758 aaKnown RBP15.49■□□□□ 0.07
LINC00643-202ENST00000553426 MTFR1Q15390 333 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 TTC6Q86TZ1 520 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 BCL11AQ9H165 835 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 RCAN3Q9UKA8 241 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 NDUFB9Q9Y6M9 179 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 PTPRFP10586 1907 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 PHIPQ8WWQ0 1821 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 GDF11O95390 407 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 CCL5P13501 91 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 PXYLP1Q8TE99 480 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 ASCC2Q9H1I8 757 aaPredicted RBP15.48■□□□□ 0.07
LINC00643-202ENST00000553426 ANTXR1Q9H6X2 564 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 ZBTB40Q9NUA8 1239 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 SERPINB13Q9UIV8 391 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 TAOK2Q9UL54 1235 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 GABRQQ9UN88 632 aa15.48■□□□□ 0.07
LINC00643-202ENST00000553426 MAGEB6P1A0A0J9YX57 407 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 GJB1P08034 283 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 IRF5Q13568 498 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 SLC9C2Q5TAH2 1124 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.47■□□□□ 0.07
LINC00643-202ENST00000553426 DNAJC2Q99543 621 aaKnown RBP15.47■□□□□ 0.07
LINC00643-202ENST00000553426 DNAJC18Q9H819 358 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 ZBTB21Q9ULJ3 1066 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 ATAD5Q96QE3 1844 aa15.47■□□□□ 0.07
LINC00643-202ENST00000553426 CAPN2P17655 700 aa15.46■□□□□ 0.07
LINC00643-202ENST00000553426 HOXA7P31268 230 aaPredicted RBP15.46■□□□□ 0.07
LINC00643-202ENST00000553426 GJA8P48165 433 aa15.46■□□□□ 0.07
LINC00643-202ENST00000553426 CCAR1Q8IX12 1150 aaKnown RBP15.46■□□□□ 0.07
LINC00643-202ENST00000553426 CRNKL1Q9BZJ0 848 aaKnown RBP15.46■□□□□ 0.07
LINC00643-202ENST00000553426 EHD4Q9H223 541 aa15.46■□□□□ 0.07
LINC00643-202ENST00000553426 CABP5Q9NP86 173 aa15.46■□□□□ 0.07
LINC00643-202ENST00000553426 GOLIM4O00461 696 aa15.45■□□□□ 0.06
LINC00643-202ENST00000553426 POLR3DP05423 398 aaPredicted RBP15.45■□□□□ 0.06
LINC00643-202ENST00000553426 CERKLQ49MI3 558 aaPredicted RBP15.45■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L2Q6R6M4 530 aa15.45■□□□□ 0.06
LINC00643-202ENST00000553426 GTF3C2Q8WUA4 911 aaPredicted RBP15.45■□□□□ 0.06
LINC00643-202ENST00000553426 FEZ1Q99689 392 aa15.45■□□□□ 0.06
LINC00643-202ENST00000553426 COLQQ9Y215 455 aaPredicted RBP15.45■□□□□ 0.06
LINC00643-202ENST00000553426 MGAMO43451 1857 aa15.45■□□□□ 0.06
LINC00643-202ENST00000553426 MYO5AQ9Y4I1 1855 aaKnown RBP15.45■□□□□ 0.06
LINC00643-202ENST00000553426 GH2P01242 217 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 INHAP05111 366 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 ELNP15502 786 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 PDE6AP16499 860 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 USP14P54578 494 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 PDE3AQ14432 1141 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 RAB3GAP1Q15042 981 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 TATDN1Q6P1N9 297 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 U2AF1L4Q8WU68 220 aaKnown RBP15.44■□□□□ 0.06
LINC00643-202ENST00000553426 P2RX7Q99572 595 aaKnown RBP15.44■□□□□ 0.06
LINC00643-202ENST00000553426 RIOK1Q9BRS2 568 aaKnown RBP15.44■□□□□ 0.06
LINC00643-202ENST00000553426 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.44■□□□□ 0.06
LINC00643-202ENST00000553426 FOCADQ5VW36 1801 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 LOC285556D6RIA3 1793 aa15.44■□□□□ 0.06
LINC00643-202ENST00000553426 HERVK_113P62684 666 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 JAG1P78504 1218 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 ABCB5Q2M3G0 1257 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 SIRT2Q8IXJ6 389 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 GPRC5AQ8NFJ5 357 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 DPF3Q92784 378 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 SHISA4Q96DD7 197 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 HTATIP2Q9BUP3 242 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 UNC93B1Q9H1C4 597 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 MORF4L1Q9UBU8 362 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 CDK5RAP2Q96SN8 1893 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 SIPA1L1O43166 1804 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 ZNF532Q9HCE3 1301 aa15.43■□□□□ 0.06
LINC00643-202ENST00000553426 SGPL1O95470 568 aa15.42■□□□□ 0.06
LINC00643-202ENST00000553426 CWC22Q9HCG8 908 aaKnown RBP15.42■□□□□ 0.06
LINC00643-202ENST00000553426 PAG1Q9NWQ8 432 aa15.42■□□□□ 0.06
LINC00643-202ENST00000553426 MCM9Q9NXL9 1143 aa15.42■□□□□ 0.06
LINC00643-202ENST00000553426 MYH1P12882 1939 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 FARP2O94887 1054 aaPredicted RBP15.41■□□□□ 0.06
LINC00643-202ENST00000553426 TFRCP02786 760 aaKnown RBP15.41■□□□□ 0.06
LINC00643-202ENST00000553426 HMGCRP04035 888 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 ATP5JP18859 108 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 MAPK4P31152 587 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 SHROOM1Q2M3G4 852 aaPredicted RBP15.41■□□□□ 0.06
LINC00643-202ENST00000553426 AMOTL1Q8IY63 956 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 DEFB118Q96PH6 123 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 LRRCC1Q9C099 1032 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 BOLA2Q9H3K6 86 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 EMILIN3Q9NT22 766 aa15.41■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L15C9J2P7 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L13C9JLJ4 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L11C9JVI0 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L18D6R9N7 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L22D6RA61 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L17D6RBQ6 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L19D6RCP7 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L20D6RJB6 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 MPHOSPH10O00566 681 aaKnown RBP15.4■□□□□ 0.06
LINC00643-202ENST00000553426 PLCD1P51178 756 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 CCNA1P78396 465 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 USP17L24Q0WX57 530 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 ZYXQ15942 572 aaKnown RBP15.4■□□□□ 0.06
LINC00643-202ENST00000553426 ZSCAN25Q6NSZ9 544 aa15.4■□□□□ 0.06
LINC00643-202ENST00000553426 SOCS4Q8WXH5 440 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms