RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 KRT13P13646 458 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 SCAND2PQ9GZW5 306 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-218ENST00000545889 MMRN2Q9H8L6 949 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 LRRC4BQ9NT99 713 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 CCDC171Q6TFL3 1326 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 GPAA1O43292 621 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 MYCP01106 439 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-218ENST00000545889 ACTN2P35609 894 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 R3HDM1Q15032 1099 aaKnown RBP9.74□□□□□ -0.85
CLIP1-218ENST00000545889 FILIP1Q7Z7B0 1213 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 NECAB1Q8N987 351 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 CNTNAP4Q9C0A0 1308 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 ARHGAP29Q52LW3 1261 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 CREB3L3Q68CJ9 461 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 DPH6Q7L8W6 267 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 BRF1Q92994 677 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 AATFQ9NY61 560 aaKnown RBP eCLIP9.74□□□□□ -0.85
CLIP1-218ENST00000545889 HMG20BQ9P0W2 317 aa9.74□□□□□ -0.85
CLIP1-218ENST00000545889 GSTTP1A0A1W2PQM5 241 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 PTPDC1A2A3K4 754 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 GOLGA6L10A6NI86 522 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 GBP2P32456 591 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 PRR5LQ6MZQ0 368 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 MYCBPQ99417 103 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 PYM1Q9BRP8 204 aaKnown RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 STAP2Q9UGK3 403 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 GNA11P29992 359 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 BIRC2Q13490 618 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 HAUS7Q99871 368 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 TRIM6Q9C030 488 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 TTF2Q9UNY4 1162 aaKnown RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 LIMCH1Q9UPQ0 1083 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 AOX1Q06278 1338 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 CDHR2Q9BYE9 1310 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 PPEF1O14829 653 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 NTSR2O95665 410 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 RABL6Q3YEC7 729 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 COL23A1Q86Y22 540 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 APPBP2Q92624 585 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 USP42Q9H9J4 1324 aaKnown RBP9.73□□□□□ -0.85
CLIP1-218ENST00000545889 CARMIL3Q8ND23 1372 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 CALML3P27482 149 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 CHRNA5P30532 468 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 PTH1RQ03431 593 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 KIAA0825Q8IV33 1275 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 TEKT1Q969V4 418 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 AS3MTQ9HBK9 375 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 MINPP1Q9UNW1 487 aa9.73□□□□□ -0.85
CLIP1-218ENST00000545889 ATP10DQ9P241 1426 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 GRAPQ13588 217 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 MFSD14BQ5SR56 506 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 GRAPLQ8TC17 118 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-218ENST00000545889 PI4K2BQ8TCG2 481 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 AZI2Q9H6S1 392 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 HOMER2Q9NSB8 354 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 RGPD2P0DJD1 1756 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 RGPD5Q99666 1765 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 PRDM1O75626 825 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 MYCLP12524 364 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-218ENST00000545889 SLC1A4P43007 532 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 UBE4AQ14139 1066 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 KRT79Q5XKE5 535 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 ATG9AQ7Z3C6 839 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 DBNDD1Q9H9R9 158 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 GPCPD1Q9NPB8 672 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 BCL9LQ86UU0 1499 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 DLG5Q8TDM6 1919 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 GRIPAP1Q4V328 841 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 GADL1Q6ZQY3 521 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 HS2ST1Q7LGA3 356 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 LRRC45Q96CN5 670 aa9.72□□□□□ -0.85
CLIP1-218ENST00000545889 BMP15O95972 392 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 GYS1P13807 737 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 PDE6AP16499 860 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 CALRP27797 417 aaKnown RBP9.71□□□□□ -0.85
CLIP1-218ENST00000545889 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.71□□□□□ -0.85
CLIP1-218ENST00000545889 CENPHQ9H3R5 247 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 C21orf2O43822 256 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 ADCY5O95622 1261 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 PARP1P09874 1014 aaKnown RBP9.71□□□□□ -0.85
CLIP1-218ENST00000545889 SCNN1DP51172 638 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 OSBPL3Q9H4L5 887 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 BSDC1Q9NW68 430 aaPredicted RBP9.71□□□□□ -0.85
CLIP1-218ENST00000545889 XDHP47989 1333 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 RGS12O14924 1447 aa9.71□□□□□ -0.85
CLIP1-218ENST00000545889 BBOX1O75936 387 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 HARSP12081 509 aaKnown RBP9.71□□□□□ -0.86
CLIP1-218ENST00000545889 RASGRF1Q13972 1273 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 SLC15A2Q16348 729 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 DALRD3Q5D0E6 543 aaKnown RBP9.71□□□□□ -0.86
CLIP1-218ENST00000545889 ZKSCAN3Q9BRR0 538 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 PALD1Q9ULE6 856 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 GTF3C6Q969F1 213 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 SPAG5Q96R06 1193 aa9.71□□□□□ -0.86
CLIP1-218ENST00000545889 FAM13AO94988 1023 aa9.7□□□□□ -0.86
CLIP1-218ENST00000545889 CHGBP05060 677 aa9.7□□□□□ -0.86
CLIP1-218ENST00000545889 ATP2B4P23634 1241 aa9.7□□□□□ -0.86
CLIP1-218ENST00000545889 SCARF1Q14162 830 aa9.7□□□□□ -0.86
CLIP1-218ENST00000545889 GPR108Q9NPR9 543 aa9.7□□□□□ -0.86
CLIP1-218ENST00000545889 HELLSQ9NRZ9 838 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms