RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ZGPATQ8N5A5 531 aaKnown RBP7.33□□□□□ -1.24
SYNE1-239ENST00000545694 CNBD1Q8NA66 436 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 EDC3Q96F86 508 aaKnown RBP7.33□□□□□ -1.24
SYNE1-239ENST00000545694 MTA3Q9BTC8 594 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 UPF3BQ9BZI7 483 aaKnown RBP7.33□□□□□ -1.24
SYNE1-239ENST00000545694 SEC31BQ9NQW1 1179 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 LEMD3Q9Y2U8 911 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 TCHHQ07283 1943 aa7.33□□□□□ -1.24
SYNE1-239ENST00000545694 QSER1Q2KHR3 1735 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 KIAA1551Q9HCM1 1747 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 FAM177BA6PVY3 158 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 NPHP1O15259 732 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 BBOX1O75936 387 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 UPP2O95045 317 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 BRD1O95696 1058 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 CYP21A2P08686 494 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 FSHRP23945 695 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 PHKA1P46020 1223 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 GRAPQ13588 217 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 WASHC4Q2M389 1173 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 SLC9C2Q5TAH2 1124 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 C15orf52Q6ZUT6 534 aaKnown RBP7.32□□□□□ -1.24
SYNE1-239ENST00000545694 CERS3Q8IU89 383 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 NLGN1Q8N2Q7 840 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 ARMC2Q8NEN0 867 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 GRAPLQ8TC17 118 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-239ENST00000545694 OSBP2Q969R2 916 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 LLPHQ9BRT6 129 aaKnown RBP7.32□□□□□ -1.24
SYNE1-239ENST00000545694 AGXT2Q9BYV1 514 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 NACAP1Q9BZK3 213 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 POLR3EQ9NVU0 708 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 MINPP1Q9UNW1 487 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 SMC3Q9UQE7 1217 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 TAF1P21675 1872 aa7.32□□□□□ -1.24
SYNE1-239ENST00000545694 PNPLA7Q6ZV29 1317 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 MAST2Q6P0Q8 1798 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 KLRG2A4D1S0 409 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 GPAA1O43292 621 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 PCP11498 1178 aaKnown RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 PDE6AP16499 860 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 RXRBP28702 533 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 TM4SF1P30408 202 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 EVCP57679 992 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 TRDNQ13061 729 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 NFIXQ14938 502 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 TXNRD1Q16881 649 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 ADCK5Q3MIX3 580 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 CRY2Q49AN0 593 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 SPTY2D1Q68D10 685 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 GIMAP6Q6P9H5 292 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 VASH1Q7L8A9 365 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 PTF1AQ7RTS3 328 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 FBXO33Q7Z6M2 555 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 VPS37DQ86XT2 251 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 LINC00528Q8N1L1 170 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 AIDAQ96BJ3 306 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 RBM17Q96I25 401 aaKnown RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 C1QTNF2Q9BXJ5 285 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 SLC24A3Q9HC58 644 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 LRRC4BQ9NT99 713 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 NRXN2Q9P2S2 1712 aa7.31□□□□□ -1.24
SYNE1-239ENST00000545694 SRP68Q9UHB9 627 aaKnown RBP7.31□□□□□ -1.24
SYNE1-239ENST00000545694 XDHP47989 1333 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 TCRBV5S4A2TA0A5A2 114 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 PATL2C9JE40 543 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 M0R2C6 588 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 ZNF213O14771 459 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 DHX16O60231 1041 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 PPFIA3O75145 1194 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 IDH1O75874 414 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 TRIM37O94972 964 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 BAG4O95429 457 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 GYS1P13807 737 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 HOXA10P31260 410 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 MCM5P33992 734 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 HMGN5P82970 282 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 FGD1P98174 961 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 EXOSC10Q01780 885 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 RASGRF1Q13972 1273 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 BICDL1Q6ZP65 573 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 SH3BP5LQ7L8J4 393 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 SH3RF1Q7Z6J0 888 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 MEIOBQ8N635 442 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 HELBQ8NG08 1087 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 NCOA7Q8NI08 942 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 RPGRQ92834 1020 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 ZNF274Q96GC6 653 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 CRAMP1Q96RY5 1269 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 SEC62Q99442 399 aaKnown RBP7.3□□□□□ -1.24
SYNE1-239ENST00000545694 CNNM2Q9H8M5 875 aa7.3□□□□□ -1.24
SYNE1-239ENST00000545694 ZNF532Q9HCE3 1301 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 SALL1Q9NSC2 1324 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 EP400Q96L91 3159 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 E7EWF7 191 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 STX6O43752 255 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 TRAK2O60296 914 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 MBD3O95983 291 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 FGAP02671 866 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 SERPINB2P05120 415 aa7.29□□□□□ -1.24
SYNE1-239ENST00000545694 ATP2B4P23634 1241 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms