RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PATL2C9JE40 543 aaKnown RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 MAP2K7O14733 419 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 IDH1O75874 414 aaKnown RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 PRR29P0C7W0 189 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 USP5P45974 858 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 HNRNPH2P55795 449 aaKnown RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 IRX5P78411 483 aaPredicted RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 RTN1Q16799 776 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 SPATA1Q5VX52 437 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 LDHAL6AQ6ZMR3 332 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 TMTC2Q8N394 836 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 AK7Q96M32 723 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 NAPBQ9H115 298 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 AATFQ9NY61 560 aaKnown RBP eCLIP9.97□□□□□ -0.81
TDP1-204ENST00000545686 ADGRG1Q9Y653 693 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 SPATA31A3Q5VYP0 1347 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 SYNRGQ9UMZ2 1314 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 POLR3GO15318 223 aaPredicted RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 KIF5CO60282 957 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 PDE8BO95263 885 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 TUBBP07437 444 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 ATF3P18847 181 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 ITGA6P23229 1130 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 PBX1P40424 430 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 CHMP4BP1P59074 171 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 PPP2R5BQ15173 497 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 LONRF2Q1L5Z9 754 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 AKNAD1Q5T1N1 836 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 APTXQ7Z2E3 356 aaKnown RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 PPFIBP1Q86W92 1011 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 MSANTD4Q8NCY6 345 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 TTLL11Q8NHH1 800 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 STAG1Q8WVM7 1258 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 FAM89AQ96GI7 184 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 MRPL44Q9H9J2 332 aaKnown RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 ZSWIM5Q9P217 1185 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 CDC23Q9UJX2 597 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 RAB21Q9UL25 225 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 RREB1Q92766 1687 aa9.97□□□□□ -0.81
TDP1-204ENST00000545686 COL5A2P05997 1499 aaPredicted RBP9.97□□□□□ -0.81
TDP1-204ENST00000545686 BMP15O95972 392 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 GNAT2P19087 354 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 CTSWP56202 376 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 CDKAL1Q5VV42 579 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 RASGRP2Q7LDG7 609 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 CNGA4Q8IV77 575 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 TRMT44Q8IYL2 757 aaKnown RBP9.96□□□□□ -0.81
TDP1-204ENST00000545686 IFNL3Q8IZI9 196 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 MED15Q96RN5 788 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 MYL10Q9BUA6 226 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 EPB41L4AQ9HCS5 686 aaPredicted RBP9.96□□□□□ -0.81
TDP1-204ENST00000545686 CNNM1Q9NRU3 951 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 SAMSN1Q9NSI8 373 aaKnown RBP9.96□□□□□ -0.81
TDP1-204ENST00000545686 WWC3Q9ULE0 1092 aa9.96□□□□□ -0.81
TDP1-204ENST00000545686 TTF2Q9UNY4 1162 aaKnown RBP9.96□□□□□ -0.81
TDP1-204ENST00000545686 MFAP3LO75121 409 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 ERLIN1O75477 346 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 PTPN21Q16825 1174 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 FILIP1LQ4L180 1135 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 GIGYF2Q6Y7W6 1299 aaKnown RBP9.96□□□□□ -0.82
TDP1-204ENST00000545686 MFSD6Q6ZSS7 791 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 SH3RF1Q7Z6J0 888 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 CRACR2BQ8N4Y2 399 aaPredicted RBP9.96□□□□□ -0.82
TDP1-204ENST00000545686 DESI2Q9BSY9 194 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 STRN4Q9NRL3 753 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 TMEM51Q9NW97 253 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 MYO1AQ9UBC5 1043 aa9.96□□□□□ -0.82
TDP1-204ENST00000545686 ADD3Q9UEY8 706 aaKnown RBP9.96□□□□□ -0.82
TDP1-204ENST00000545686 PNPLA7Q6ZV29 1317 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 SOWAHDA6NJG2 315 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 GRIN1Q05586 938 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 MAP3K12Q12852 859 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 CUL4BQ13620 913 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 WTAPQ15007 396 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 KARSQ15046 597 aaKnown RBP9.95□□□□□ -0.82
TDP1-204ENST00000545686 PUM3Q15397 648 aaKnown RBP9.95□□□□□ -0.82
TDP1-204ENST00000545686 ZNF827Q17R98 1081 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 HSP90AA4PQ58FG1 418 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 SPECC1Q5M775 1068 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 IGSF22Q8N9C0 903 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 CABLES1Q8TDN4 633 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 GSDMAQ96QA5 445 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 GREM2Q9H772 168 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 CWC15Q9P013 229 aaKnown RBP9.95□□□□□ -0.82
TDP1-204ENST00000545686 PCDHB6Q9Y5E3 794 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 A0A1B0GUL6 1792 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 RTL9Q8NET4 1388 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 MYH1P12882 1939 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 PHLPP1O60346 1717 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 MROH5Q6ZUA9 1318 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 ERICH2A1L162 156 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 EIF3JO75822 258 aaKnown RBP9.95□□□□□ -0.82
TDP1-204ENST00000545686 GUCY1A2P33402 732 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 PHKA1P46020 1223 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 ST5P78524 1137 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 TRIM14Q14142 442 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 RAD9BQ6WBX8 426 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 HDXQ7Z353 690 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 NLRP10Q86W26 655 aa9.95□□□□□ -0.82
TDP1-204ENST00000545686 IQUBQ8NA54 791 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms