RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RTCBQ9Y3I0 505 aaKnown RBP20.73■□□□□ 0.91
VIM-209ENST00000544301 PCDHB6Q9Y5E3 794 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 MYH13Q9UKX3 1938 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 AKAP17AQ02040 695 aaKnown RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 CHAF1AQ13111 956 aaPredicted RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 PKN1Q16512 942 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 CNNM3Q8NE01 707 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 AATFQ9NY61 560 aaKnown RBP eCLIP20.72■□□□□ 0.91
VIM-209ENST00000544301 CCNL1Q9UK58 526 aaPredicted RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 MYH6P13533 1939 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 GRIN1Q05586 938 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 SPECC1Q5M775 1068 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 ELOA2Q8IYF1 753 aaPredicted RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 ARHGEF1Q92888 912 aaKnown RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 CRNKL1Q9BZJ0 848 aaKnown RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 XPO4Q9C0E2 1151 aaKnown RBP20.72■□□□□ 0.91
VIM-209ENST00000544301 IFNKQ9P0W0 207 aa20.72■□□□□ 0.91
VIM-209ENST00000544301 DLEC1Q9Y238 1755 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 PRPF3O43395 683 aaKnown RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 PRDX5P30044 214 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 EVX2Q03828 476 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 TROAPQ12815 778 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 FOXP4Q8IVH2 680 aaPredicted RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 FNBP4Q8N3X1 1017 aaPredicted RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 OSBPL5Q9H0X9 879 aaPredicted RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 PDCL3Q9H2J4 239 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 DCP1AQ9NPI6 582 aaPredicted RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 RBM28Q9NW13 759 aaKnown RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 IMPACTQ9P2X3 320 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 ORC4O43929 436 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 SMC2O95347 1197 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 PLEKHA8P1O95397 391 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 SKILP12757 684 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 MDM2Q00987 491 aaPredicted RBP20.71■□□□□ 0.91
VIM-209ENST00000544301 TXNRD3Q86VQ6 643 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 CABP5Q9NP86 173 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 VPS54Q9P1Q0 977 aa20.71■□□□□ 0.91
VIM-209ENST00000544301 IRS2Q9Y4H2 1338 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CALM1P0DP23 149 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CALM2P0DP24 149 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CALM3P0DP25 149 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 XBP1P17861 261 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 GSDMDP57764 484 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CCZ1BP86790 482 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CCZ1P86791 482 aaPredicted RBP20.7■□□□□ 0.9
VIM-209ENST00000544301 ZNF579Q8NAF0 562 aaKnown RBP20.7■□□□□ 0.9
VIM-209ENST00000544301 C16orf45Q96MC5 204 aaPredicted RBP20.7■□□□□ 0.9
VIM-209ENST00000544301 PHF20Q9BVI0 1012 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 HSD3B7Q9H2F3 369 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 ATP8A2Q9NTI2 1148 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 CEP131Q9UPN4 1083 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 NHSQ6T4R5 1651 aa20.7■□□□□ 0.9
VIM-209ENST00000544301 DDAH1O94760 285 aa20.69■□□□□ 0.9
VIM-209ENST00000544301 PCDHA5Q9Y5H7 936 aa20.69■□□□□ 0.9
VIM-209ENST00000544301 SRPRBQ9Y5M8 271 aaKnown RBP20.69■□□□□ 0.9
VIM-209ENST00000544301 V9GY48 417 aaPredicted RBP20.69■□□□□ 0.9
VIM-209ENST00000544301 hCG_1642624A0A1W2PR95 340 aa20.69■□□□□ 0.9
VIM-209ENST00000544301 RIOK3O14730 519 aaKnown RBP20.69■□□□□ 0.9
VIM-209ENST00000544301 FAM182BQ5T319 152 aa20.69■□□□□ 0.9
VIM-209ENST00000544301 FOXN1O15353 648 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 ATP2B1P20020 1258 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 LMOD1P29536 600 aaPredicted RBP20.68■□□□□ 0.9
VIM-209ENST00000544301 TPD52L1Q16890 204 aaPredicted RBP20.68■□□□□ 0.9
VIM-209ENST00000544301 TMED8Q6PL24 325 aaPredicted RBP20.68■□□□□ 0.9
VIM-209ENST00000544301 TSC1Q92574 1164 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 MAST2Q6P0Q8 1798 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 ZBTB22O15209 634 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 CYP2D6P10635 497 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 KRT2P35908 639 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 FANCCQ00597 558 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 MYL5Q02045 173 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 SBK1Q52WX2 424 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 TMTC3Q6ZXV5 915 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 HOOK1Q9UJC3 728 aaKnown RBP20.68■□□□□ 0.9
VIM-209ENST00000544301 JAG2Q9Y219 1238 aa20.68■□□□□ 0.9
VIM-209ENST00000544301 LAMB1P07942 1786 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 FAM205CA6NFA0 338 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 POLR2DO15514 142 aaKnown RBP20.67■□□□□ 0.9
VIM-209ENST00000544301 TNNT1P13805 278 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 OLFM4Q6UX06 510 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 TMC6Q7Z403 805 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 MAP7D2Q96T17 732 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 ARPP21Q9UBL0 812 aaPredicted RBP20.67■□□□□ 0.9
VIM-209ENST00000544301 TNRC6CQ9HCJ0 1690 aaKnown RBP20.67■□□□□ 0.9
VIM-209ENST00000544301 THSD7AQ9UPZ6 1657 aa20.67■□□□□ 0.9
VIM-209ENST00000544301 NMT2O60551 498 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 ATP1A3P13637 1013 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 BMP6P22004 513 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 EARS2Q5JPH6 523 aaKnown RBP20.66■□□□□ 0.9
VIM-209ENST00000544301 FAM47AQ5JRC9 791 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 MORC2Q9Y6X9 1032 aaPredicted RBP20.66■□□□□ 0.9
VIM-209ENST00000544301 TRIM75PA6NK02 468 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 POSTNQ15063 836 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 SPTY2D1Q68D10 685 aaPredicted RBP20.66■□□□□ 0.9
VIM-209ENST00000544301 CSRNP2Q9H175 543 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 SERTAD1Q9UHV2 236 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 USP21Q9UK80 565 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 KIAA1551Q9HCM1 1747 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 CCDC88AQ3V6T2 1871 aa20.66■□□□□ 0.9
VIM-209ENST00000544301 NPHP1O15259 732 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms