RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SLC27A3Q5K4L6 730 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 CTR9Q6PD62 1173 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 C11orf57Q6ZUT1 292 aaPredicted RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 BBXQ8WY36 941 aaPredicted RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 PHKBQ93100 1093 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 CCDC34Q96HJ3 373 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 GJD4Q96KN9 370 aaPredicted RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 A0A1B0GVL5 298 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 ZSCAN20P17040 1043 aaPredicted RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 PTPREP23469 700 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 MECOMQ03112 1051 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 PDE4BQ07343 736 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 TPRNQ4KMQ1 711 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 IFIT1BQ5T764 474 aaKnown RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 DIS3L2Q8IYB7 885 aaKnown RBP11.36□□□□□ -0.59
SS18-205ENST00000542420 BRMS1Q9HCU9 246 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 FAM13BQ9NYF5 915 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 RFC4P35249 363 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 FUT2Q10981 343 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 ENAHQ8N8S7 591 aaPredicted RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 TRIML1Q8N9V2 468 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 ZNF384Q8TF68 577 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 PYM1Q9BRP8 204 aaKnown RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 DCP1AQ9NPI6 582 aaPredicted RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 TOMM22Q9NS69 142 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 TCP11L1Q9NUJ3 509 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 MINDY4BA8MYZ0 360 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 DYNC1I1O14576 645 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 WDHD1O75717 1129 aaPredicted RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 TRAPPC10P48553 1259 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 TROAPQ12815 778 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 CRY2Q49AN0 593 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 RRP12Q5JTH9 1297 aaKnown RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 ZNF804AQ7Z570 1209 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 SDR42E1Q8WUS8 393 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 PHF20Q9BVI0 1012 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 KCNF1Q9H3M0 494 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 SRP68Q9UHB9 627 aaKnown RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 SRPRBQ9Y5M8 271 aaKnown RBP11.35□□□□□ -0.59
SS18-205ENST00000542420 MROH7-TTC4A0A0A0MT08 1334 aa11.35□□□□□ -0.59
SS18-205ENST00000542420 C10orf71Q711Q0 1435 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 MYH1P12882 1939 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 ATP2B4P23634 1241 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 KCNJ6P48051 423 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 PLCB2Q00722 1185 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 NT5DC1Q5TFE4 455 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 SHC4Q6S5L8 630 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 TMTC3Q6ZXV5 915 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 DGKHQ86XP1 1220 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 AIFM3Q96NN9 605 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 OSBPL5Q9H0X9 879 aaPredicted RBP11.34□□□□□ -0.59
SS18-205ENST00000542420 TTC12Q9H892 705 aaPredicted RBP11.34□□□□□ -0.59
SS18-205ENST00000542420 SH3GLB2Q9NR46 395 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 CLIP2Q9UDT6 1046 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 BAG3O95817 575 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 RXRAP19793 462 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 KIF5BP33176 963 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 GTF2F1P35269 517 aaKnown RBP eCLIP11.34□□□□□ -0.59
SS18-205ENST00000542420 KRT2P35908 639 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 GNAQP50148 359 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 KRBA2Q6ZNG9 492 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 MTERF4Q7Z6M4 381 aaKnown RBP11.34□□□□□ -0.59
SS18-205ENST00000542420 RAB11FIP4Q86YS3 637 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 AMOTL1Q8IY63 956 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 CNBD1Q8NA66 436 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 FERMT2Q96AC1 680 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 ZNF287Q9HBT7 754 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 MKRN1Q9UHC7 482 aaKnown RBP11.34□□□□□ -0.59
SS18-205ENST00000542420 DACH1Q9UI36 760 aa11.34□□□□□ -0.59
SS18-205ENST00000542420 TRPC5Q9UL62 973 aaPredicted RBP11.34□□□□□ -0.59
SS18-205ENST00000542420 DYNLL1P63167 89 aaKnown RBP11.33□□□□□ -0.6
SS18-205ENST00000542420 BICDL1Q6ZP65 573 aa11.33□□□□□ -0.6
SS18-205ENST00000542420 SLF2Q8IX21 1173 aa11.33□□□□□ -0.6
SS18-205ENST00000542420 CTCFLQ8NI51 663 aaPredicted RBP11.33□□□□□ -0.6
SS18-205ENST00000542420 MYL10Q9BUA6 226 aa11.33□□□□□ -0.6
SS18-205ENST00000542420 AATFQ9NY61 560 aaKnown RBP eCLIP11.33□□□□□ -0.6
SS18-205ENST00000542420 FBXO2Q9UK22 296 aaPredicted RBP11.33□□□□□ -0.6
SS18-205ENST00000542420 RGPD3A6NKT7 1758 aaPredicted RBP11.33□□□□□ -0.6
SS18-205ENST00000542420 RGPD4Q7Z3J3 1758 aa11.33□□□□□ -0.6
SS18-205ENST00000542420 BRWD3Q6RI45 1802 aa11.33□□□□□ -0.6
SS18-205ENST00000542420 CNTNAP5Q8WYK1 1306 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 USP17L12C9JPN9 530 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 USP17L21D6R901 530 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 CBFA2T2O43439 604 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 PLCG2P16885 1265 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 HOXA10P31260 410 aaPredicted RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 ST5P78524 1137 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 PKN1Q16512 942 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 DZIP1Q86YF9 867 aaKnown RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 DRC7Q8IY82 874 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 INCENPQ9NQS7 918 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 GJB4Q9NTQ9 266 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 KCNH3Q9ULD8 1083 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 MYH8P13535 1937 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 KLRG2A4D1S0 409 aaPredicted RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 BTBD18B2RXH4 712 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 BBOX1O75936 387 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 TUBB4AP04350 444 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 LDHBP07195 334 aaKnown RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 TOB1P50616 345 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms