RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CCDC85CA6NKD9 419 aa20.78■□□□□ 0.92
CLSTN3-210ENST00000540931 PRKG1Q13976 671 aa20.78■□□□□ 0.92
CLSTN3-210ENST00000540931 ERO1BQ86YB8 467 aa20.78■□□□□ 0.92
CLSTN3-210ENST00000540931 AS3MTQ9HBK9 375 aa20.78■□□□□ 0.92
CLSTN3-210ENST00000540931 TSKSQ9UJT2 592 aa20.78■□□□□ 0.92
CLSTN3-210ENST00000540931 BAZ2AQ9UIF9 1905 aaKnown RBP20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 FOXP2O15409 715 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 ZBTB48P10074 688 aaPredicted RBP20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 MCCP23508 829 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 CDK8P49336 464 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 PPATQ06203 517 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 TRDNQ13061 729 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 MFSD6Q6ZSS7 791 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 CDAN1Q8IWY9 1227 aa20.77■□□□□ 0.92
CLSTN3-210ENST00000540931 UBE2Q2LH0YL09 131 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 FGRP09769 529 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 ZKSCAN1P17029 563 aaPredicted RBP20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 ZNF157P51786 506 aaPredicted RBP20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 CCDC178Q5BJE1 867 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 AKNAD1Q5T1N1 836 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 DLK2Q6UY11 383 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 KRT23Q9C075 422 aa20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 LSG1Q9H089 658 aaKnown RBP20.76■□□□□ 0.91
CLSTN3-210ENST00000540931 LAMB1P07942 1786 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 ORC4O43929 436 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 SHMT1P34896 483 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 INHBEP58166 350 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 MLLT1Q03111 559 aaPredicted RBP20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 ABCB5Q2M3G0 1257 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 TMEM179Q6ZVK1 233 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 STAG1Q8WVM7 1258 aa20.75■□□□□ 0.91
CLSTN3-210ENST00000540931 SPDYE5A6NIY4 337 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 USP17L5A8MUK1 530 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 CA12O43570 354 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 NOGQ13253 232 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 VGLL4Q14135 290 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 KRT32Q14532 448 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 SH2D4AQ9H788 454 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 DNAJC18Q9H819 358 aa20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 RBM8AQ9Y5S9 174 aaKnown RBP20.74■□□□□ 0.91
CLSTN3-210ENST00000540931 CYP2D6P10635 497 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 PTH1RQ03431 593 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 SLC4A8Q2Y0W8 1093 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 ESR2Q92731 530 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 IL25Q9H293 177 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 KANSL2Q9H9L4 492 aa20.73■□□□□ 0.91
CLSTN3-210ENST00000540931 CXCL11O14625 94 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 TSPY3P0CV98 308 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 TSPY8P0CW00 308 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 INPP5BP32019 993 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 PPIL2Q13356 520 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 ZKSCAN4Q969J2 545 aaPredicted RBP20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 DYNLL2Q96FJ2 89 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 SYNPO2Q9UMS6 1093 aa20.72■□□□□ 0.91
CLSTN3-210ENST00000540931 CYP2D7A0A087X1C5 515 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 MPHOSPH10O00566 681 aaKnown RBP20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 SLC10A3P09131 477 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 PTPRAP18433 802 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 GTF2A2P52657 109 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 NECTIN1Q15223 517 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 WDR18Q9BV38 432 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 UPF2Q9HAU5 1272 aaKnown RBP20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 TOMM22Q9NS69 142 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 ZBTB21Q9ULJ3 1066 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 SNCAIPQ9Y6H5 919 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 SIPA1L1O43166 1804 aa20.71■□□□□ 0.91
CLSTN3-210ENST00000540931 MANSC4A6NHS7 340 aaPredicted RBP20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 TSPY2A6NKD2 308 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 C19orf81C9J6K1 198 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 HMGB1P09429 215 aaKnown RBP20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 USP14P54578 494 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 CTDSPL2Q05D32 466 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 SREBF2Q12772 1141 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 TSGA10IPQ3SY00 556 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 MOB2Q70IA6 237 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 RALYLQ86SE5 291 aaKnown RBP20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 IQCA1Q86XH1 822 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 OPTNQ96CV9 577 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 MTA3Q9BTC8 594 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 MCOLN1Q9GZU1 580 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 ELP3Q9H9T3 547 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 ARHGEF10LQ9HCE6 1279 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 MYH8P13535 1937 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 CASP8AP2Q9UKL3 1982 aa20.7■□□□□ 0.9
CLSTN3-210ENST00000540931 DOCK1Q14185 1865 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 FAM196BA6NMK8 535 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 GH2P01242 217 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 CYP21A2P08686 494 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 RASA1P20936 1047 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 SNAPC2Q13487 334 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 SPRYD7Q5W111 196 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 OTUD7BQ6GQQ9 843 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 NEDD1Q8NHV4 660 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 NCOA7Q8NI08 942 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 WNK4Q96J92 1243 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 TCP11L1Q9NUJ3 509 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 PLIN4Q96Q06 1357 aa20.69■□□□□ 0.9
CLSTN3-210ENST00000540931 LAMA4Q16363 1823 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms