RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OTOP1Q7RTM1 612 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 TTC6Q86TZ1 520 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 CRACR2BQ8N4Y2 399 aaPredicted RBP17.14■□□□□ 0.33
USP28-209ENST00000540925 ZNF280CQ8ND82 737 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 ERC2O15083 957 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 IGHDP01880 384 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 ANKRD45Q5TZF3 282 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 PROCA1Q8NCQ7 364 aaPredicted RBP17.13■□□□□ 0.33
USP28-209ENST00000540925 CD99L2Q8TCZ2 262 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 ERO1AQ96HE7 468 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 ATP8A2Q9NTI2 1148 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 TAOK2Q9UL54 1235 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 ZBTB21Q9ULJ3 1066 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 BRCA2P51587 3418 aa17.13■□□□□ 0.33
USP28-209ENST00000540925 GDF11O95390 407 aa17.12■□□□□ 0.33
USP28-209ENST00000540925 SPP2Q13103 211 aa17.12■□□□□ 0.33
USP28-209ENST00000540925 FBXO46Q6PJ61 603 aaPredicted RBP17.12■□□□□ 0.33
USP28-209ENST00000540925 OSBP2Q969R2 916 aa17.12■□□□□ 0.33
USP28-209ENST00000540925 STRBPQ96SI9 672 aaKnown RBP17.12■□□□□ 0.33
USP28-209ENST00000540925 MCM9Q9NXL9 1143 aa17.12■□□□□ 0.33
USP28-209ENST00000540925 AGTPBP1Q9UPW5 1226 aa17.12■□□□□ 0.33
USP28-209ENST00000540925 RNF113AO15541 343 aaKnown RBP17.11■□□□□ 0.33
USP28-209ENST00000540925 ZFYP08048 801 aaPredicted RBP17.11■□□□□ 0.33
USP28-209ENST00000540925 BCRP11274 1271 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 PDE1AP54750 535 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 TREML2Q5T2D2 321 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 APPBP2Q92624 585 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 PARK7Q99497 189 aaKnown RBP17.11■□□□□ 0.33
USP28-209ENST00000540925 TRIM34Q9BYJ4 488 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 RWDD1Q9H446 243 aaPredicted RBP17.11■□□□□ 0.33
USP28-209ENST00000540925 HPS5Q9UPZ3 1129 aa17.11■□□□□ 0.33
USP28-209ENST00000540925 ZSWIM8A7E2V4 1837 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 BAZ2AQ9UIF9 1905 aaKnown RBP17.1■□□□□ 0.33
USP28-209ENST00000540925 GH2P01242 217 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 POLR3DP05423 398 aaPredicted RBP17.1■□□□□ 0.33
USP28-209ENST00000540925 CYP2C8P10632 490 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 CYP2D6P10635 497 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 BACE1P56817 501 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 LACTBP83111 547 aaPredicted RBP17.1■□□□□ 0.33
USP28-209ENST00000540925 GADL1Q6ZQY3 521 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 AS3MTQ9HBK9 375 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 TRIM17Q9Y577 477 aa17.1■□□□□ 0.33
USP28-209ENST00000540925 SMIM22K7EJ46 135 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 CTGFP29279 349 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 GUCY1A2P33402 732 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 HMGCS2P54868 508 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 NUCB1Q02818 461 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 CERKLQ49MI3 558 aaPredicted RBP17.09■□□□□ 0.33
USP28-209ENST00000540925 C12orf60Q5U649 245 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 ARHGAP39Q9C0H5 1083 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 EFCC1Q9HA90 598 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 CPA4Q9UI42 421 aa17.09■□□□□ 0.33
USP28-209ENST00000540925 GSG1L2A8MUP6 293 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 MTMR2Q13614 643 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 GIMAP6Q6P9H5 292 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 CTR9Q6PD62 1173 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 PTPN22Q9Y2R2 807 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 SLC4A4Q9Y6R1 1079 aa17.08■□□□□ 0.32
USP28-209ENST00000540925 CYP2D7A0A087X1C5 515 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 C19orf81C9J6K1 198 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 USP17L12C9JPN9 530 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 USP17L21D6R901 530 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 M0R2C6 588 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 ABCB5Q2M3G0 1257 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 ZMYM1Q5SVZ6 1142 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 LNPKQ9C0E8 428 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 EPB41L4AQ9HCS5 686 aaPredicted RBP17.07■□□□□ 0.32
USP28-209ENST00000540925 SWAP70Q9UH65 585 aa17.07■□□□□ 0.32
USP28-209ENST00000540925 USP17L10C9JJH3 530 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 GPAA1O43292 621 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 HOXA7P31268 230 aaPredicted RBP17.06■□□□□ 0.32
USP28-209ENST00000540925 SBK1Q52WX2 424 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 C16orf86Q6ZW13 317 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 CHD1LQ86WJ1 897 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 TICAM2Q86XR7 235 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 DYNLL2Q96FJ2 89 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 C12orf42Q96LP6 360 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 OSBPL3Q9H4L5 887 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 EMILIN3Q9NT22 766 aa17.06■□□□□ 0.32
USP28-209ENST00000540925 ROBO3Q96MS0 1386 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 GNRH1P01148 92 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 LRRFIP1Q32MZ4 808 aaKnown RBP17.05■□□□□ 0.32
USP28-209ENST00000540925 PLEKHM2Q8IWE5 1019 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 EVI5LQ96CN4 794 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 TRIM47Q96LD4 638 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 SEC62Q99442 399 aaKnown RBP17.05■□□□□ 0.32
USP28-209ENST00000540925 FSD1Q9BTV5 496 aa17.05■□□□□ 0.32
USP28-209ENST00000540925 ARPP21Q9UBL0 812 aaPredicted RBP17.05■□□□□ 0.32
USP28-209ENST00000540925 ZBTB47Q9UFB7 747 aaPredicted RBP17.05■□□□□ 0.32
USP28-209ENST00000540925 MKI67P46013 3256 aaKnown RBP17.05■□□□□ 0.32
USP28-209ENST00000540925 FOXP2O15409 715 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 GNAT2P19087 354 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 CDK8P49336 464 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 SEPT2Q15019 361 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 ARHGEF6Q15052 776 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 B4GALNT3Q6L9W6 998 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 ACER1Q8TDN7 264 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 ARMC5Q96C12 935 aa17.04■□□□□ 0.32
USP28-209ENST00000540925 KIAA1683Q9H0B3 1180 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms