RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CNNM2Q9H8M5 875 aa12.5□□□□□ -0.41
VPS33A-204ENST00000540669 PASKQ96RG2 1323 aa12.5□□□□□ -0.41
VPS33A-204ENST00000540669 NID2Q14112 1375 aa12.5□□□□□ -0.41
VPS33A-204ENST00000540669 PARP14Q460N5 1801 aa12.5□□□□□ -0.41
VPS33A-204ENST00000540669 MINDY4BA8MYZ0 360 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 POLR3DP05423 398 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-204ENST00000540669 RPS6KB1P23443 525 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 EVCP57679 992 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 JAG1P78504 1218 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 SEC23AQ15436 765 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 NOL9Q5SY16 702 aaKnown RBP12.49□□□□□ -0.41
VPS33A-204ENST00000540669 RCSD1Q6JBY9 416 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 CYB5R4Q7L1T6 521 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 CDC37L1Q7L3B6 337 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 SULF1Q8IWU6 871 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 AMOTL1Q8IY63 956 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 DCPSQ96C86 337 aaKnown RBP12.49□□□□□ -0.41
VPS33A-204ENST00000540669 CDCA5Q96FF9 252 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 NEK1Q96PY6 1258 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 INCENPQ9NQS7 918 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 TCP11L1Q9NUJ3 509 aa12.49□□□□□ -0.41
VPS33A-204ENST00000540669 SCAF8Q9UPN6 1271 aaKnown RBP12.49□□□□□ -0.41
VPS33A-204ENST00000540669 FAM196BA6NMK8 535 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 B4E1Z4 1266 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 HMGB1P09429 215 aaKnown RBP12.48□□□□□ -0.41
VPS33A-204ENST00000540669 GUCY1A2P33402 732 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 PDE4BQ07343 736 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 RABEP1Q15276 862 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 SLC4A8Q2Y0W8 1093 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 DLK2Q6UY11 383 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 MFSD6Q6ZSS7 791 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS33A-204ENST00000540669 NEDD1Q8NHV4 660 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 NCOA7Q8NI08 942 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 ANKS1AQ92625 1134 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 KLRG1Q96E93 195 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 CCDC17Q96LX7 622 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 JAKMIP1Q96N16 626 aaKnown RBP12.48□□□□□ -0.41
VPS33A-204ENST00000540669 KRT23Q9C075 422 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 TSHZ2Q9NRE2 1034 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 GINM1Q9NU53 330 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 THSD7BQ9C0I4 1608 aa12.48□□□□□ -0.41
VPS33A-204ENST00000540669 PRDM1O75626 825 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 SLC3A2P08195 630 aaKnown RBP12.47□□□□□ -0.41
VPS33A-204ENST00000540669 AKR1B1P15121 316 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 SHROOM1Q2M3G4 852 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-204ENST00000540669 MAP1SQ66K74 1059 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-204ENST00000540669 RUFY3Q7L099 469 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 DHX32Q7L7V1 743 aaKnown RBP12.47□□□□□ -0.41
VPS33A-204ENST00000540669 SGMS1Q86VZ5 419 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 ESR2Q92731 530 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 HOOK2Q96ED9 719 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 ZNF287Q9HBT7 754 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 IL17RBQ9NRM6 502 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 ZSWIM5Q9P217 1185 aa12.47□□□□□ -0.41
VPS33A-204ENST00000540669 UNCXA6NJT0 531 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 SH2B2O14492 632 aaPredicted RBP12.46□□□□□ -0.41
VPS33A-204ENST00000540669 KDM4AO75164 1064 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 CD2BP2O95400 341 aaKnown RBP12.46□□□□□ -0.41
VPS33A-204ENST00000540669 CASTP20810 708 aaKnown RBP12.46□□□□□ -0.41
VPS33A-204ENST00000540669 PSMA5P28066 241 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 CAP2P40123 477 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 TOB2Q14106 344 aaPredicted RBP12.46□□□□□ -0.41
VPS33A-204ENST00000540669 SUPT20HL1Q3ZLR7 823 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 LDLRAD1Q5T700 205 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 DCAF15Q66K64 600 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 USP48Q86UV5 1035 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 IGDCC4Q8TDY8 1250 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 UPF3BQ9BZI7 483 aaKnown RBP12.46□□□□□ -0.41
VPS33A-204ENST00000540669 ZBTB21Q9ULJ3 1066 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 SYNPO2Q9UMS6 1093 aa12.46□□□□□ -0.41
VPS33A-204ENST00000540669 RLFQ13129 1914 aa12.46□□□□□ -0.42
VPS33A-204ENST00000540669 A0A0G2JMZ2 1700 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 TRAF5O00463 557 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 USP2O75604 605 aaPredicted RBP12.45□□□□□ -0.42
VPS33A-204ENST00000540669 CPA1P15085 419 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 MCM5P33992 734 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 LIFRP42702 1097 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 FKBP1BP68106 108 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 PRAMEF18Q5VWM3 479 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 BLOC1S2Q6QNY1 142 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.45□□□□□ -0.42
VPS33A-204ENST00000540669 RALYLQ86SE5 291 aaKnown RBP12.45□□□□□ -0.42
VPS33A-204ENST00000540669 SIAH1Q8IUQ4 282 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 ZSCAN29Q8IWY8 852 aaPredicted RBP12.45□□□□□ -0.42
VPS33A-204ENST00000540669 ENAHQ8N8S7 591 aaPredicted RBP12.45□□□□□ -0.42
VPS33A-204ENST00000540669 TMEM87BQ96K49 555 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 ZNF341Q9BYN7 854 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 LY9Q9HBG7 655 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 SNCAIPQ9Y6H5 919 aa12.45□□□□□ -0.42
VPS33A-204ENST00000540669 TNKSO95271 1327 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 PRC1O43663 620 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 CTNND1O60716 968 aaKnown RBP12.44□□□□□ -0.42
VPS33A-204ENST00000540669 NF2P35240 595 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 RCAN1P53805 252 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 TMEM179Q6ZVK1 233 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 CRACR2BQ8N4Y2 399 aaPredicted RBP12.44□□□□□ -0.42
VPS33A-204ENST00000540669 SNX21Q969T3 373 aa12.44□□□□□ -0.42
VPS33A-204ENST00000540669 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms