RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZNF589Q86UQ0 364 aaPredicted RBP14.15□□□□□ -0.14
CLIP1-208ENST00000537004 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLIP1-208ENST00000537004 ZNF532Q9HCE3 1301 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 TCRBV5S4A2TA0A5A2 114 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 TESPA1A2RU30 521 aaPredicted RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 GPR25O00155 361 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 GTF2A2P52657 109 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 CRHR2Q13324 411 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 TTC14Q96N46 770 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 RIOK1Q9BRS2 568 aaKnown RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 ZKSCAN1P17029 563 aaPredicted RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 CASTP20810 708 aaKnown RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 PPATQ06203 517 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 PPIL2Q13356 520 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 CUL4AQ13619 759 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 SHROOM1Q2M3G4 852 aaPredicted RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 NOL9Q5SY16 702 aaKnown RBP14.14□□□□□ -0.15
CLIP1-208ENST00000537004 CREB3L3Q68CJ9 461 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 TICAM2Q86XR7 235 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 DNAJC18Q9H819 358 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 ZHX2Q9Y6X8 837 aa14.14□□□□□ -0.15
CLIP1-208ENST00000537004 PTPRAP18433 802 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 USP5P45974 858 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 NUCB2P80303 420 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 DGKZQ13574 1117 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 SCYL3Q8IZE3 742 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 JAKMIP1Q96N16 626 aaKnown RBP14.13□□□□□ -0.15
CLIP1-208ENST00000537004 GBP4Q96PP9 640 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 TM6SF1Q9BZW5 370 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 MCOLN1Q9GZU1 580 aa14.13□□□□□ -0.15
CLIP1-208ENST00000537004 MAGEB6P1A0A0J9YX57 407 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 BTBD19C9JJ37 291 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 TBC1D12O60347 775 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 ALDH1A1P00352 501 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 EVX2Q03828 476 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 SNAPC2Q13487 334 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 GSE1Q14687 1217 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 ADCK5Q3MIX3 580 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 MCMDC2Q4G0Z9 681 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 PICK1Q9NRD5 415 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 PI4KBQ9UBF8 816 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 TCHHQ07283 1943 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 DDX11L8A8MPP1 907 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 SLC27A2O14975 620 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 CTNND1O60716 968 aaKnown RBP14.12□□□□□ -0.15
CLIP1-208ENST00000537004 IGSF3O75054 1194 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 CETPP11597 493 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 JAG1P78504 1218 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 RNF20Q5VTR2 975 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 LCORLQ8N3X6 602 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 SDR42E1Q8WUS8 393 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 INTS4Q96HW7 963 aaKnown RBP14.12□□□□□ -0.15
CLIP1-208ENST00000537004 CFHR5Q9BXR6 569 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 MAST2Q6P0Q8 1798 aa14.12□□□□□ -0.15
CLIP1-208ENST00000537004 CPA1P15085 419 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 ADD2P35612 726 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 AK2P54819 239 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 OTUD7BQ6GQQ9 843 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 SEC62Q99442 399 aaKnown RBP14.11□□□□□ -0.15
CLIP1-208ENST00000537004 DHX36Q9H2U1 1008 aaKnown RBP14.11□□□□□ -0.15
CLIP1-208ENST00000537004 ARMT1Q9H993 441 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 ZSWIM6Q9HCJ5 1215 aa14.11□□□□□ -0.15
CLIP1-208ENST00000537004 TRIM75PA6NK02 468 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 PRKAB2O43741 272 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CAP1Q01518 475 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 MOGSQ13724 837 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 PKP1Q13835 747 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 TAF1CQ15572 869 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CCDC129Q6ZRS4 1044 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 ABHD8Q96I13 439 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 KCNH4Q9UQ05 1017 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CYP46A1Q9Y6A2 500 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 DOCK2Q92608 1830 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CAP2P40123 477 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 PLCD1P51178 756 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 VPS53Q5VIR6 699 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CLEC17AQ6ZS10 378 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 RUFY3Q7L099 469 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 CRACR2BQ8N4Y2 399 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-208ENST00000537004 HELLSQ9NRZ9 838 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 HERC5Q9UII4 1024 aaKnown RBP14.1□□□□□ -0.15
CLIP1-208ENST00000537004 AFG3L2Q9Y4W6 797 aa14.1□□□□□ -0.15
CLIP1-208ENST00000537004 COL2A1P02458 1487 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-208ENST00000537004 MBD4O95243 580 aa14.09□□□□□ -0.15
CLIP1-208ENST00000537004 GDF11O95390 407 aa14.09□□□□□ -0.15
CLIP1-208ENST00000537004 ZMYM1Q5SVZ6 1142 aa14.09□□□□□ -0.15
CLIP1-208ENST00000537004 PUS7LQ9H0K6 701 aaKnown RBP14.09□□□□□ -0.15
CLIP1-208ENST00000537004 PDRG1Q9NUG6 133 aa14.09□□□□□ -0.15
CLIP1-208ENST00000537004 LIMCH1Q9UPQ0 1083 aa14.09□□□□□ -0.15
CLIP1-208ENST00000537004 SMIM22K7EJ46 135 aa14.08□□□□□ -0.15
CLIP1-208ENST00000537004 RNF113AO15541 343 aaKnown RBP14.08□□□□□ -0.15
CLIP1-208ENST00000537004 FKTNO75072 461 aa14.08□□□□□ -0.15
CLIP1-208ENST00000537004 ECM2O94769 699 aaPredicted RBP14.08□□□□□ -0.15
CLIP1-208ENST00000537004 PSMA5P28066 241 aa14.08□□□□□ -0.15
CLIP1-208ENST00000537004 METTL16Q86W50 562 aaKnown RBP14.08□□□□□ -0.15
CLIP1-208ENST00000537004 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.08□□□□□ -0.157e-6■■□□□ 13.6
CLIP1-208ENST00000537004 HLA-DOAP06340 250 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 SPP2Q13103 211 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 TSGA10IPQ3SY00 556 aa14.08□□□□□ -0.16
CLIP1-208ENST00000537004 TMED8Q6PL24 325 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms