RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 PDE4AP27815 886 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 USP5P45974 858 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 SPP2Q13103 211 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 SNAPC2Q13487 334 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 TTF1Q15361 905 aaPredicted RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 TAF1CQ15572 869 aaPredicted RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 KIAA1755Q5JYT7 1200 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 ANKRD45Q5TZF3 282 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 C17orf99Q6UX52 265 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 CTU1Q7Z7A3 348 aaKnown RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 ANKRD23Q86SG2 305 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 SIAH1Q8IUQ4 282 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 KBTBD3Q8NAB2 608 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 NKX2-3Q8TAU0 364 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 ACER1Q8TDN7 264 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 HOOK2Q96ED9 719 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 STRBPQ96SI9 672 aaKnown RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 LNPKQ9C0E8 428 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 EPB41L4AQ9HCS5 686 aaPredicted RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 PI4KBQ9UBF8 816 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 STAP2Q9UGK3 403 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 CPA4Q9UI42 421 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 HERC5Q9UII4 1024 aaKnown RBP6.14□□□□□ -1.43
USH1C-210ENST00000534556 MYH6P13533 1939 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 CEP290O15078 2479 aa6.14□□□□□ -1.43
USH1C-210ENST00000534556 A0A1W2PRG0 241 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 CXCL11O14625 94 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 TLR2O60603 784 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 IGSF3O75054 1194 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 ALDH1A1P00352 501 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 GH2P01242 217 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 PDE1AP54750 535 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 HMGCS2P54868 508 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 SP3Q02447 781 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 UBE3CQ15386 1083 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 SH3D19Q5HYK7 790 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 C12orf60Q5U649 245 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 B4GALNT3Q6L9W6 998 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 CTR9Q6PD62 1173 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 GADL1Q6ZQY3 521 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 CCDC129Q6ZRS4 1044 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 SKAP1Q86WV1 359 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 FOXP4Q8IVH2 680 aaPredicted RBP6.13□□□□□ -1.43
USH1C-210ENST00000534556 TRIM47Q96LD4 638 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 NOL10Q9BSC4 688 aaKnown RBP6.13□□□□□ -1.43
USH1C-210ENST00000534556 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.13□□□□□ -1.43
USH1C-210ENST00000534556 EHD4Q9H223 541 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 DHX36Q9H2U1 1008 aaKnown RBP6.13□□□□□ -1.43
USH1C-210ENST00000534556 INCENPQ9NQS7 918 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 EMILIN3Q9NT22 766 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 ZBTB21Q9ULJ3 1066 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 HPS5Q9UPZ3 1129 aa6.13□□□□□ -1.43
USH1C-210ENST00000534556 CCDC85CA6NKD9 419 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 USP17L5A8MUK1 530 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 USP17L12C9JPN9 530 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 USP17L21D6R901 530 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 RNF113AO15541 343 aaKnown RBP6.12□□□□□ -1.43
USH1C-210ENST00000534556 AKR1B1P15121 316 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 MX1P20591 662 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 RANBP2P49792 3224 aaKnown RBP6.12□□□□□ -1.43
USH1C-210ENST00000534556 NUCB1Q02818 461 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 MTMR2Q13614 643 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 SEPT2Q15019 361 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 ZMYM1Q5SVZ6 1142 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 VPS53Q5VIR6 699 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 TTC41PQ6P2S7 1318 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 PLEKHM2Q8IWE5 1019 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 ZNF280CQ8ND82 737 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 WDR18Q9BV38 432 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 CRNKL1Q9BZJ0 848 aaKnown RBP6.12□□□□□ -1.43
USH1C-210ENST00000534556 IL25Q9H293 177 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 ZFYVE28Q9HCC9 887 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 TXNRD2Q9NNW7 524 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 ZCCHC17Q9NP64 241 aaKnown RBP6.12□□□□□ -1.43
USH1C-210ENST00000534556 PICK1Q9NRD5 415 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 MCM9Q9NXL9 1143 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 SERPINB13Q9UIV8 391 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 GABRQQ9UN88 632 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 PTPN22Q9Y2R2 807 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 TRIM17Q9Y577 477 aa6.12□□□□□ -1.43
USH1C-210ENST00000534556 A0A0D9SFI3 127 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 POTEFA5A3E0 1075 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 GPAA1O43292 621 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 CNMDO75829 334 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 POLR3DP05423 398 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ASNSP08243 561 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 CDK8P49336 464 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 RGS19P49795 217 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 SOX10P56693 466 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 BACE1P56817 501 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 LACTBP83111 547 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ZYXQ15942 572 aaKnown RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 FBXO46Q6PJ61 603 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 TMED8Q6PL24 325 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ZNF589Q86UQ0 364 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 CHD1LQ86WJ1 897 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 STK11IPQ8N1F8 1099 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 CRACR2BQ8N4Y2 399 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 APPBP2Q92624 585 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 GCC1Q96CN9 775 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms