RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TOP2BQ02880 1626 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 GNAT3A8MTJ3 354 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 RLBP1P12271 317 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 CAP2P40123 477 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 ETF1P62495 437 aaKnown RBP6.76□□□□□ -1.33
CD44-235ENST00000532339 PSMD2Q13200 908 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.76□□□□□ -1.33
CD44-235ENST00000532339 AGMOQ6ZNB7 445 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 NPAS4Q8IUM7 802 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 FOXQ1Q9C009 403 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 PRDM5Q9NQX1 630 aaPredicted RBP6.76□□□□□ -1.33
CD44-235ENST00000532339 RNF19AQ9NV58 838 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 PARP2Q9UGN5 583 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 MAPK8IP1Q9UQF2 711 aa6.76□□□□□ -1.33
CD44-235ENST00000532339 MROH2BQ7Z745 1585 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 SNAPC4Q5SXM2 1469 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 BIN1O00499 593 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 EOMESO95936 686 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 LIG3P49916 1009 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 DAB2P98082 770 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 SLBPQ14493 270 aaKnown RBP eCLIP6.75□□□□□ -1.33
CD44-235ENST00000532339 ANGEL2Q5VTE6 544 aaKnown RBP6.75□□□□□ -1.33
CD44-235ENST00000532339 DNAJC14Q6Y2X3 702 aaPredicted RBP6.75□□□□□ -1.33
CD44-235ENST00000532339 HID1Q8IV36 788 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 MFSD2AQ8NA29 543 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 PI4K2BQ8TCG2 481 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 ASB11Q8WXH4 323 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 FBRSQ9HAH7 460 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 TACC3Q9Y6A5 838 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 MAPKBP1O60336 1514 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 TOPBP1Q92547 1522 aa6.75□□□□□ -1.33
CD44-235ENST00000532339 CD96P40200 585 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 ST13P50502 369 aaKnown RBP6.74□□□□□ -1.33
CD44-235ENST00000532339 XPCQ01831 940 aaPredicted RBP6.74□□□□□ -1.33
CD44-235ENST00000532339 SEPT6Q14141 434 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 MAP3K11Q16584 847 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 MEI1Q5TIA1 1274 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 SPACA3Q8IXA5 215 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 MIR1-1HGQ9H1L0 117 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 RC3H2Q9HBD1 1191 aaKnown RBP6.74□□□□□ -1.33
CD44-235ENST00000532339 PCDHB5Q9Y5E4 795 aa6.74□□□□□ -1.33
CD44-235ENST00000532339 TARBP1Q13395 1621 aaKnown RBP6.74□□□□□ -1.33
CD44-235ENST00000532339 SLITRK5O94991 958 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 RNASE1P07998 156 aaKnown RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 GRK4P32298 578 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 CDK8P49336 464 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 CLCN7P51798 805 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 TAF1CQ15572 869 aaPredicted RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 DIEXFQ68CQ4 756 aaKnown RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 ZNF746Q6NUN9 644 aaPredicted RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 TMC4Q7Z404 712 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 KRTAP19-1Q8IUB9 90 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 MIPEPQ99797 713 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 NOC4LQ9BVI4 516 aaKnown RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 MBNL3Q9NUK0 354 aaKnown RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 TPX2Q9ULW0 747 aaKnown RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 ABCC8Q09428 1581 aa6.73□□□□□ -1.33
CD44-235ENST00000532339 MAGI1Q96QZ7 1491 aaPredicted RBP6.73□□□□□ -1.33
CD44-235ENST00000532339 GFRA2O00451 464 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 PAPLNO95428 1278 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 YBX3P16989 372 aaKnown RBP eCLIP6.72□□□□□ -1.33
CD44-235ENST00000532339 NKG7Q16617 165 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 NKPD1Q17RQ9 610 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 LCE3BQ5TA77 95 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 SLC23A3Q6PIS1 610 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 C22orf34Q6ZV56 151 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 ATG4DQ86TL0 474 aaPredicted RBP6.72□□□□□ -1.33
CD44-235ENST00000532339 ADAMTS6Q9UKP5 1117 aa6.72□□□□□ -1.33
CD44-235ENST00000532339 CST3P01034 146 aaPredicted RBP6.71□□□□□ -1.34
CD44-235ENST00000532339 TFE3P19532 575 aaPredicted RBP6.71□□□□□ -1.34
CD44-235ENST00000532339 IKZF1Q13422 519 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 TSNAXIP1Q2TAA8 658 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 SFRP5Q5T4F7 317 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 LETMD1Q6P1Q0 360 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 FBXO33Q7Z6M2 555 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 KRTAP1-3Q8IUG1 177 aa6.71□□□□□ -1.34
CD44-235ENST00000532339 FAM155AB1AL88 458 aaPredicted RBP6.7□□□□□ -1.34
CD44-235ENST00000532339 PGRP06401 933 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 ERCC3P19447 782 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 ITGAEP38570 1179 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 PDE4BQ07343 736 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 PRAMEF13Q5VWM6 474 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 MFSD4AQ8N468 514 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 LRRN4CLQ8ND94 238 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 COX4I2Q96KJ9 171 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 PITPNM2Q9BZ72 1349 aa6.7□□□□□ -1.34
CD44-235ENST00000532339 USP31Q70CQ4 1352 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 SORBS3O60504 671 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 CTSHP09668 335 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 ZNF865P0CJ78 1059 aaPredicted RBP6.69□□□□□ -1.34
CD44-235ENST00000532339 CYP7A1P22680 504 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 RPL6Q02878 288 aaKnown RBP6.69□□□□□ -1.34
CD44-235ENST00000532339 ZP2Q05996 745 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 OGFOD2Q6N063 350 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 MRPL41Q8IXM3 137 aaKnown RBP6.69□□□□□ -1.34
CD44-235ENST00000532339 CRELD1Q96HD1 420 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 FAM161BQ96MY7 647 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 MRS2Q9HD23 443 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 TLR6Q9Y2C9 796 aa6.69□□□□□ -1.34
CD44-235ENST00000532339 TDRD9Q8NDG6 1382 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms