RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 CHURC1-FNTBB4DL54 471 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 IGLV1-40P01703 118 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 ITGB7P26010 798 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 ARMCX6Q7L4S7 300 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 ZAR1Q86SH2 424 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 MCATQ8IVS2 390 aaKnown RBP7.64□□□□□ -1.19
CD44-230ENST00000528922 FBXL6Q8N531 539 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 TBC1D32Q96NH3 1257 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 PPT2Q9UMR5 302 aa7.64□□□□□ -1.19
CD44-230ENST00000528922 CST3P01034 146 aaPredicted RBP7.63□□□□□ -1.19
CD44-230ENST00000528922 F13BP05160 661 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 SOX9P48436 509 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 PRAMEF13Q5VWM6 474 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 SLC6A19Q695T7 634 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 SPATA32Q96LK8 384 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 DPH2Q9BQC3 489 aaPredicted RBP7.63□□□□□ -1.19
CD44-230ENST00000528922 FOXQ1Q9C009 403 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 ANTXR1Q9H6X2 564 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 SHROOM4Q9ULL8 1493 aa7.63□□□□□ -1.19
CD44-230ENST00000528922 SLC22A31A6NKX4 558 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 FAM170BA6NMN3 283 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 LEFTY1O75610 366 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 LRIG2O94898 1065 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 ATF4P18848 351 aaPredicted RBP7.62□□□□□ -1.19
CD44-230ENST00000528922 NASPP49321 788 aaPredicted RBP7.62□□□□□ -1.19
CD44-230ENST00000528922 ZC3H6P61129 1189 aaKnown RBP7.62□□□□□ -1.19
CD44-230ENST00000528922 COL9A2Q14055 689 aaPredicted RBP7.62□□□□□ -1.19
CD44-230ENST00000528922 PRSS36Q5K4E3 855 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 DBNDD2Q9BQY9 259 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 KLHL3Q9UH77 587 aa7.62□□□□□ -1.19
CD44-230ENST00000528922 WDR64B1ANS9 1081 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 FAM87AP0C7U9 286 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 NAALADL2Q58DX5 795 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 OGFOD3Q6PK18 319 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 TOP6BLQ8N6T0 577 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 FAM13CQ8NE31 585 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 RIN3Q8TB24 985 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 SHKBP1Q8TBC3 707 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 XAGE3Q8WTP9 111 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 SEC16BQ96JE7 1060 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 DUSP23Q9BVJ7 150 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 PRDM10Q9NQV6 1147 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 ZNRF3Q9ULT6 936 aa7.61□□□□□ -1.19
CD44-230ENST00000528922 BICRAQ9NZM4 1560 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 RBAK-RBAKDNI3L0D1 243 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 GSC2O15499 205 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 SLITRK5O94991 958 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 GNL2Q13823 731 aaKnown RBP7.6□□□□□ -1.19
CD44-230ENST00000528922 CCDC81Q6ZN84 652 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 ZNF765Q7L2R6 523 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 ZDHHC13Q8IUH4 622 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 SLC43A3Q8NBI5 491 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 FERD3LQ96RJ6 166 aa7.6□□□□□ -1.19
CD44-230ENST00000528922 ERCC6Q03468 1493 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 K7ELQ4 463 aaPredicted RBP7.59□□□□□ -1.19
CD44-230ENST00000528922 ARSHQ5FYA8 562 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 SLC51AQ86UW1 340 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 SLFN12Q8IYM2 578 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 MFSD2AQ8NA29 543 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 ATG4CQ96DT6 458 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 C8orf37Q96NL8 207 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 GMIPQ9P107 970 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 NACADO15069 1562 aa7.59□□□□□ -1.19
CD44-230ENST00000528922 EOMESO95936 686 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 YARSP54577 528 aaKnown RBP7.58□□□□□ -1.2
CD44-230ENST00000528922 MLECQ14165 292 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 FBXW10Q5XX13 1052 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 OVOS1Q6IE37 1185 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 VPS37DQ86XT2 251 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 GIMAP7Q8NHV1 300 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 MIPEPQ99797 713 aa7.58□□□□□ -1.2
CD44-230ENST00000528922 CNTNAP4Q9C0A0 1308 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 PRR19A6NJB7 356 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 MEIS3P2A8K0S8 358 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 IMPDH2P12268 514 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 DNAJA1P31689 397 aaKnown RBP7.57□□□□□ -1.2
CD44-230ENST00000528922 ARID5AQ03989 594 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 LRRFIP1Q32MZ4 808 aaKnown RBP7.57□□□□□ -1.2
CD44-230ENST00000528922 CDCP2Q5VXM1 449 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 LETMD1Q6P1Q0 360 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 RBBP8NLQ8NC74 664 aaPredicted RBP7.57□□□□□ -1.2
CD44-230ENST00000528922 PPP1R13LQ8WUF5 828 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 TMEM40Q8WWA1 233 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 HEXIM2Q96MH2 286 aaKnown RBP7.57□□□□□ -1.2
CD44-230ENST00000528922 GMLQ99445 158 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 SRRTQ9BXP5 876 aaKnown RBP7.57□□□□□ -1.2
CD44-230ENST00000528922 CNNM2Q9H8M5 875 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 ATG3Q9NT62 314 aa7.57□□□□□ -1.2
CD44-230ENST00000528922 ADAM23O75077 832 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 FGRP09769 529 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 CYP27A1Q02318 531 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 DUSP27Q5VZP5 1158 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 CDH24Q86UP0 819 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 MCF2L2Q86YR7 1114 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 DNAJB8Q8NHS0 232 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 BAHD1Q8TBE0 780 aaPredicted RBP7.56□□□□□ -1.2
CD44-230ENST00000528922 CYB5D2Q8WUJ1 264 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 SHDQ96IW2 340 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 KIF2CQ99661 725 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms