RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SPAG9O60271 1321 aaKnown RBP7.89□□□□□ -1.15
NUP54-218ENST00000515460 ZEB1P37275 1124 aaPredicted RBP7.89□□□□□ -1.15
NUP54-218ENST00000515460 GGT6Q6P531 493 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 DNAJC5GQ8N7S2 189 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 RBCK1Q9BYM8 510 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 ZC3H12CQ9C0D7 883 aaKnown RBP7.89□□□□□ -1.15
NUP54-218ENST00000515460 NIF3L1Q9GZT8 377 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 DAGLAQ9Y4D2 1042 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 GPATCH8Q9UKJ3 1502 aaKnown RBP7.88□□□□□ -1.15
NUP54-218ENST00000515460 ATRNO75882 1429 aa7.88□□□□□ -1.15
NUP54-218ENST00000515460 ZNF644Q9H582 1327 aaPredicted RBP7.88□□□□□ -1.15
NUP54-218ENST00000515460 AOC2O75106 756 aa7.88□□□□□ -1.15
NUP54-218ENST00000515460 GADD45BO75293 160 aaPredicted RBP7.88□□□□□ -1.15
NUP54-218ENST00000515460 ZNF765Q7L2R6 523 aa7.88□□□□□ -1.15
NUP54-218ENST00000515460 GATA6Q92908 595 aa7.88□□□□□ -1.15
NUP54-218ENST00000515460 CCDC74AQ96AQ1 378 aa7.88□□□□□ -1.15
NUP54-218ENST00000515460 CFDP1Q9UEE9 299 aaPredicted RBP7.88□□□□□ -1.15
NUP54-218ENST00000515460 CCDC18Q5T9S5 1454 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 MYO5CQ9NQX4 1742 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.87□□□□□ -1.15
NUP54-218ENST00000515460 EIF1AYO14602 144 aaKnown RBP7.87□□□□□ -1.15
NUP54-218ENST00000515460 DYNC1LI2O43237 492 aaPredicted RBP7.87□□□□□ -1.15
NUP54-218ENST00000515460 ITPKAP23677 461 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 ALKBH8Q96BT7 664 aaKnown RBP7.87□□□□□ -1.15
NUP54-218ENST00000515460 ACSS3Q9H6R3 686 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 BSDC1Q9NW68 430 aaPredicted RBP7.87□□□□□ -1.15
NUP54-218ENST00000515460 DCTN4Q9UJW0 460 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 PPP1R9AQ9ULJ8 1098 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 UGGT1Q9NYU2 1555 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 FAM135AQ9P2D6 1515 aa7.87□□□□□ -1.15
NUP54-218ENST00000515460 MSH6P52701 1360 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 GPR182O15218 404 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 PRNPP04156 253 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 LIG1P18858 919 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 VSIG10LQ86VR7 867 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 FBXL18Q96ME1 805 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 WDR18Q9BV38 432 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 SPON1Q9HCB6 807 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 ABCB6Q9NP58 842 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 ZC3H7BQ9UGR2 993 aaKnown RBP7.86□□□□□ -1.15
NUP54-218ENST00000515460 BRWD3Q6RI45 1802 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 CDC42BPBQ9Y5S2 1711 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 KIAA1107Q9UPP5 1409 aa7.86□□□□□ -1.15
NUP54-218ENST00000515460 AHDC1Q5TGY3 1603 aaPredicted RBP7.85□□□□□ -1.15
NUP54-218ENST00000515460 SAMD9LQ8IVG5 1584 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 CYP27A1Q02318 531 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 KCNA1Q09470 495 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 EZH2Q15910 746 aaKnown RBP7.85□□□□□ -1.15
NUP54-218ENST00000515460 NFXL1Q6ZNB6 911 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 FLCNQ8NFG4 579 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 EPS8L3Q8TE67 593 aaKnown RBP7.85□□□□□ -1.15
NUP54-218ENST00000515460 LRRIQ1Q96JM4 1722 aa7.85□□□□□ -1.15
NUP54-218ENST00000515460 CCNB3Q8WWL7 1395 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 ATP7AQ04656 1500 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 SHANK3Q9BYB0 1731 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 GOLGB1Q14789 3259 aaKnown RBP7.84□□□□□ -1.15
NUP54-218ENST00000515460 FYCO1Q9BQS8 1478 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 TMEM238LA0A1B0GVL6 79 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 PATL2C9JE40 543 aaKnown RBP7.84□□□□□ -1.15
NUP54-218ENST00000515460 KCNQ2O43526 872 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 LTKP29376 864 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 AP3B2Q13367 1082 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 WDR89Q96FK6 387 aaPredicted RBP7.84□□□□□ -1.15
NUP54-218ENST00000515460 CSRNP1Q96S65 589 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 C1GALT1Q9NS00 363 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 TRAK1Q9UPV9 953 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 KIDINS220Q9ULH0 1771 aa7.84□□□□□ -1.15
NUP54-218ENST00000515460 PREX2Q70Z35 1606 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 BTBD11A6QL63 1104 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 IGHA2P01877 340 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 MAPK1P28482 360 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 FAAP100Q0VG06 881 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 GSX1Q9H4S2 264 aaPredicted RBP7.83□□□□□ -1.16
NUP54-218ENST00000515460 CCDC86Q9H6F5 360 aaKnown RBP7.83□□□□□ -1.16
NUP54-218ENST00000515460 TIAM1Q13009 1591 aa7.83□□□□□ -1.16
NUP54-218ENST00000515460 A2MP01023 1474 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 MBD5Q9P267 1494 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 PTPN12Q05209 780 aaKnown RBP7.82□□□□□ -1.16
NUP54-218ENST00000515460 GRM2Q14416 872 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 OGFOD3Q6PK18 319 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 SEZ6L2Q6UXD5 910 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 TMC7Q7Z402 723 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 DDX17Q92841 729 aaKnown RBP7.82□□□□□ -1.16
NUP54-218ENST00000515460 PIDD1Q9HB75 910 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 NLRP2Q9NX02 1062 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 IVNS1ABPQ9Y6Y0 642 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 SYCP2Q9BX26 1530 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 MTUS2Q5JR59 1369 aa7.82□□□□□ -1.16
NUP54-218ENST00000515460 DHX29Q7Z478 1369 aaKnown RBP7.82□□□□□ -1.16
NUP54-218ENST00000515460 UNC13BO14795 1591 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 FAM83GA6ND36 823 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 SLFN14P0C7P3 912 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 YBX3P16989 372 aaKnown RBP eCLIP7.81□□□□□ -1.16
NUP54-218ENST00000515460 KCNA6P17658 529 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 CDK5R2Q13319 367 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 COL19A1Q14993 1142 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 RPS26P11Q5JNZ5 115 aaPredicted RBP7.81□□□□□ -1.16
NUP54-218ENST00000515460 PRPF40BQ6NWY9 871 aaKnown RBP7.81□□□□□ -1.16
NUP54-218ENST00000515460 DTHD1Q6ZMT9 781 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 KRTAP9-9Q9BYP9 154 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms