RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 ECM2O94769 699 aaPredicted RBP12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 FMNL1O95466 1100 aaPredicted RBP12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 HOXD10P28358 340 aa12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 FCGRTP55899 365 aa12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 MTMR2Q13614 643 aa12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 SH3TC2Q8TF17 1288 aa12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 SERPINB13Q9UIV8 391 aa12.68□□□□□ -0.38
HMGXB3-205ENST00000514469 SMARCA5O60264 1052 aaPredicted RBP12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 BACE1P56817 501 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 PRKCZQ05513 592 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 PABPC4Q13310 644 aaKnown RBP eCLIP12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 FAM110CQ1W6H9 321 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 TTC6Q86TZ1 520 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 LCORLQ8N3X6 602 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 CRNKL1Q9BZJ0 848 aaKnown RBP12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 BCL11AQ9H165 835 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 BOLA2Q9H3K6 86 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 MGAMO43451 1857 aa12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 MKI67P46013 3256 aaKnown RBP12.67□□□□□ -0.38
HMGXB3-205ENST00000514469 GH2P01242 217 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 SHMT1P34896 483 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 ADD2P35612 726 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 RRP1P56182 461 aaKnown RBP12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 ANKRD13CQ8N6S4 541 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 RAET1EQ8TD07 263 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 TMEM106CQ9BVX2 250 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 ASCC2Q9H1I8 757 aaPredicted RBP12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 DCTPP1Q9H773 170 aa12.66□□□□□ -0.38
HMGXB3-205ENST00000514469 C19orf81C9J6K1 198 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 USP17L10C9JJH3 530 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 EN2P19622 333 aaPredicted RBP12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 HOXA7P31268 230 aaPredicted RBP12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 GRK4P32298 578 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 GCLCP48506 637 aaPredicted RBP12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 PLCD1P51178 756 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 GABPAQ06546 454 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 SDR42E1Q8WUS8 393 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.65□□□□□ -0.389e-8■■□□□ 14.4
HMGXB3-205ENST00000514469 DCP1AQ9NPI6 582 aaPredicted RBP12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 TMOD4Q9NZQ9 345 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 GABRQQ9UN88 632 aa12.65□□□□□ -0.38
HMGXB3-205ENST00000514469 TNPO2O14787 897 aaKnown RBP12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 MBD4O95243 580 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 EVX2Q03828 476 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 UBE3CQ15386 1083 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 CERKLQ49MI3 558 aaPredicted RBP12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 PRPF38BQ5VTL8 546 aaKnown RBP12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 SLAIN1Q8ND83 568 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 C12orf42Q96LP6 360 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 ARMT1Q9H993 441 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 ECHDC1Q9NTX5 307 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 MCM9Q9NXL9 1143 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 MORF4L1Q9UBU8 362 aa12.64□□□□□ -0.39
HMGXB3-205ENST00000514469 MYH7P12883 1935 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 MYCP01106 439 aaPredicted RBP12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 CHGBP05060 677 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 FLT3LGP49771 235 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 IRX3P78415 501 aaPredicted RBP12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 IRF5Q13568 498 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 MTFR1Q15390 333 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 ABCB5Q2M3G0 1257 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 USP17L2Q6R6M4 530 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 EMILIN3Q9NT22 766 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 ATP8A2Q9NTI2 1148 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 TAOK2Q9UL54 1235 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 PCDHB15Q9Y5E8 787 aa12.63□□□□□ -0.39
HMGXB3-205ENST00000514469 PRKAB2O43741 272 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 CYP2D6P10635 497 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 GUCY1A2P33402 732 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 HERVK_113P62684 666 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 RAB3GAP1Q15042 981 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 ZSCAN25Q6NSZ9 544 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 PXYLP1Q8TE99 480 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 COA7Q96BR5 231 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 SHISA4Q96DD7 197 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 GPATCH3Q96I76 525 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 P2RX7Q99572 595 aaKnown RBP12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 KIAA1683Q9H0B3 1180 aa12.62□□□□□ -0.39
HMGXB3-205ENST00000514469 ADCY3O60266 1144 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 CCL5P13501 91 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 USP14P54578 494 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 UBXN2AP68543 259 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 TSHZ3Q63HK5 1081 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 GTF3C2Q8WUA4 911 aaPredicted RBP12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 FEZ1Q99689 392 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 PUS7LQ9H0K6 701 aaKnown RBP12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 TXNRD2Q9NNW7 524 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 CABP5Q9NP86 173 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 SWAP70Q9UH65 585 aa12.61□□□□□ -0.39
HMGXB3-205ENST00000514469 VCAM1P19320 739 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 SEPT2Q15019 361 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 ZYXQ15942 572 aaKnown RBP12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 POTEEQ6S8J3 1075 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 KBTBD3Q8NAB2 608 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 SLC44A5Q8NCS7 719 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 ACER1Q8TDN7 264 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 PLXNB2O15031 1838 aa12.6□□□□□ -0.39
HMGXB3-205ENST00000514469 TTC41PQ6P2S7 1318 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms