RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 TEPSINQ96N21 525 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 MTA3Q9BTC8 594 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 AGXT2Q9BYV1 514 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 GGA3Q9NZ52 723 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 LAMA4Q16363 1823 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 ECM29Q5VYK3 1845 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 NAV1Q8NEY1 1877 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 TRPM7Q96QT4 1865 aa15.33■□□□□ 0.04
LIMCH1-220ENST00000514190 DDX60LQ5H9U9 1706 aaKnown RBP15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 TBC1D12O60347 775 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 RASA1P20936 1047 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 SHMT1P34896 483 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 TFAP4Q01664 338 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 MAP3K10Q02779 954 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 BECN1Q14457 450 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 Q6ZUG5 572 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 IGDCC4Q8TDY8 1250 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 TMEM87BQ96K49 555 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 LRRC2Q9BYS8 371 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 TBC1D2Q9BYX2 928 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 HERC5Q9UII4 1024 aaKnown RBP15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 SCAF8Q9UPN6 1271 aaKnown RBP15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 PPP2R3BQ9Y5P8 575 aa15.32■□□□□ 0.04
LIMCH1-220ENST00000514190 MYH1P12882 1939 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 TRAF5O00463 557 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 SLURP2P0DP57 97 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 FGD1P98174 961 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 FMR1Q06787 632 aaKnown RBP eCLIP15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 TOB2Q14106 344 aaPredicted RBP15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 FAM47AQ5JRC9 791 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 HSCBQ8IWL3 235 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 CDAN1Q8IWY9 1227 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 DCPSQ96C86 337 aaKnown RBP15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 CCDC17Q96LX7 622 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 TRIM34Q9BYJ4 488 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 DNAJC18Q9H819 358 aa15.31■□□□□ 0.04
LIMCH1-220ENST00000514190 TSPY2A6NKD2 308 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 IFIT3O14879 490 aaKnown RBP15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 SART3Q15020 963 aaKnown RBP15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 TMEM67Q5HYA8 995 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 TATDN1Q6P1N9 297 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 IQCA1Q86XH1 822 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 NEDD1Q8NHV4 660 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 ZSCAN10Q96SZ4 725 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 GLIS2Q9BZE0 524 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 GPHNQ9NQX3 736 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 TCP11L1Q9NUJ3 509 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 LIMCH1Q9UPQ0 1083 aa15.3■□□□□ 0.04
LIMCH1-220ENST00000514190 FAM196BA6NMK8 535 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 SH2B2O14492 632 aaPredicted RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 TSPY3P0CV98 308 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 TSPY8P0CW00 308 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 EVCP57679 992 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 CERKLQ49MI3 558 aaPredicted RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 CCDC178Q5BJE1 867 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 CDC37L1Q7L3B6 337 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 SULF1Q8IWU6 871 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 TMTC2Q8N394 836 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 BRF1Q92994 677 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 ZSCAN31Q96LW9 406 aaPredicted RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 IPO9Q96P70 1041 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 ZKSCAN3Q9BRR0 538 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 LARP6Q9BRS8 491 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 UBAC1Q9BSL1 405 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 ANGEL1Q9UNK9 670 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 LAMB1P07942 1786 aa15.29■□□□□ 0.04
LIMCH1-220ENST00000514190 RASSF10A6NK89 507 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 K7ELQ4 463 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 AKR1B1P15121 316 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 LIFRP42702 1097 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 SEC23AQ15436 765 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 NBPF12Q5TAG4 269 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 CST9Q5W186 159 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 MIGA2Q7L4E1 593 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 SGMS1Q86VZ5 419 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 ANKS1AQ92625 1134 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 HOOK2Q96ED9 719 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 TMX3Q96JJ7 454 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 LY9Q9HBG7 655 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 IL17RBQ9NRM6 502 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 TPCN1Q9ULQ1 816 aa15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 ABT1Q9ULW3 272 aaKnown RBP15.28■□□□□ 0.04
LIMCH1-220ENST00000514190 ERICH2A1L162 156 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 RRP1BQ14684 758 aaKnown RBP15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 WTAPQ15007 396 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 SUPT20HL1Q3ZLR7 823 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 PRAMEF18Q5VWM3 479 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 NOL8Q76FK4 1167 aaKnown RBP15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 KRT26Q7Z3Y9 468 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 USP48Q86UV5 1035 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 DGKHQ86XP1 1220 aa15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 ENAHQ8N8S7 591 aaPredicted RBP15.27■□□□□ 0.04
LIMCH1-220ENST00000514190 POLR2AP24928 1970 aaKnown RBP15.27■□□□□ 0.03
LIMCH1-220ENST00000514190 TNKSO95271 1327 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 IGKV6D-41A0A0C4DH26 115 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 NMT2O60551 498 aa15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 CELF2O95319 508 aaKnown RBP15.26■□□□□ 0.03
LIMCH1-220ENST00000514190 NOVP48745 357 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms