RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GPR182O15218 404 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 GAS2O43903 313 aaKnown RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 ESRRAP11474 423 aaPredicted RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 GP2P55259 537 aaKnown RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 CCNJLQ8IV13 435 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 FMNL2Q96PY5 1086 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 RBCK1Q9BYM8 510 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 DNAJC25Q9H1X3 360 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 CLEC4MQ9H2X3 399 aaPredicted RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 SOX17Q9H6I2 414 aaPredicted RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 OAS3Q9Y6K5 1087 aaKnown RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 CEP162Q5TB80 1403 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 NPHP3Q7Z494 1330 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 TAL1P17542 331 aaPredicted RBP6.09□□□□□ -1.43
USP54-217ENST00000498213 PCDH1Q08174 1060 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 NUTM2GQ5VZR2 741 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.09□□□□□ -1.43
USP54-217ENST00000498213 CCDC74AQ96AQ1 378 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 KCNF1Q9H3M0 494 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 SLC52A1Q9NWF4 448 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 NLRP2Q9NX02 1062 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 IVNS1ABPQ9Y6Y0 642 aa6.09□□□□□ -1.43
USP54-217ENST00000498213 COL22A1Q8NFW1 1626 aaPredicted RBP6.09□□□□□ -1.43
USP54-217ENST00000498213 ADGRB3O60242 1522 aa6.09□□□□□ -1.44
USP54-217ENST00000498213 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.08□□□□□ -1.44
USP54-217ENST00000498213 TNS1Q9HBL0 1735 aaKnown RBP6.08□□□□□ -1.44
USP54-217ENST00000498213 GRIA4P48058 902 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 KCNA1Q09470 495 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 HP1BP3Q5SSJ5 553 aaPredicted RBP6.08□□□□□ -1.44
USP54-217ENST00000498213 KIAA0319Q5VV43 1072 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 HGSNATQ68CP4 663 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 ZDHHC13Q8IUH4 622 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 ARMC10Q8N2F6 343 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 C12orf50Q8NA57 414 aaPredicted RBP6.08□□□□□ -1.44
USP54-217ENST00000498213 CSRNP1Q96S65 589 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 CYP4F12Q9HCS2 524 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 BTG4Q9NY30 223 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 TRAK1Q9UPV9 953 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 DLC1Q96QB1 1528 aa6.08□□□□□ -1.44
USP54-217ENST00000498213 ADGRB2O60241 1585 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 PATL2C9JE40 543 aaKnown RBP6.07□□□□□ -1.44
USP54-217ENST00000498213 TM4SF5O14894 197 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 YBX3P16989 372 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP54-217ENST00000498213 GRIK1P39086 918 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 NFIAQ12857 509 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 SPRED3Q2MJR0 410 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 TMC7Q7Z402 723 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 JMYQ8N9B5 988 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 ALKBH8Q96BT7 664 aaKnown RBP6.07□□□□□ -1.44
USP54-217ENST00000498213 MYRFLQ96LU7 910 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 TCF12Q99081 682 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 ZFYVE1Q9HBF4 777 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 PPP4R2Q9NY27 417 aa6.07□□□□□ -1.44
USP54-217ENST00000498213 RPRD2Q5VT52 1461 aaKnown RBP6.07□□□□□ -1.44
USP54-217ENST00000498213 EHBP1L1Q8N3D4 1523 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 NUP188Q5SRE5 1749 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 LOC100289279A0A1B0GTE1 492 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 CYP11A1P05108 521 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 BMP3P12645 472 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 PREPP48147 710 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 INTS5Q6P9B9 1019 aaKnown RBP6.06□□□□□ -1.44
USP54-217ENST00000498213 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.06□□□□□ -1.44
USP54-217ENST00000498213 ZSCAN29Q8IWY8 852 aaPredicted RBP6.06□□□□□ -1.44
USP54-217ENST00000498213 TRIM42Q8IWZ5 723 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 FAM46AQ96IP4 442 aaKnown RBP6.06□□□□□ -1.44
USP54-217ENST00000498213 CORO1BQ9BR76 489 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 MTFR1LQ9H019 292 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 C7orf69Q9H7B7 122 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 TNS2Q63HR2 1409 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 METP08581 1390 aa6.06□□□□□ -1.44
USP54-217ENST00000498213 SPATA31A5Q5VU36 1347 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 SPATA31A3Q5VYP0 1347 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 SPATA31A7Q8IWB4 1347 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 PXDNQ92626 1479 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 HSPA1AP0DMV8 641 aaKnown RBP6.05□□□□□ -1.44
USP54-217ENST00000498213 HSPA1BP0DMV9 641 aaKnown RBP6.05□□□□□ -1.44
USP54-217ENST00000498213 PLCB3Q01970 1234 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 RNF43Q68DV7 783 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 NLGN2Q8NFZ4 835 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 ZNF576Q9H609 170 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 HIF3AQ9Y2N7 669 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 RNF114Q9Y508 228 aa6.05□□□□□ -1.44
USP54-217ENST00000498213 MARF1Q9Y4F3 1742 aaKnown RBP6.05□□□□□ -1.44
USP54-217ENST00000498213 GOLGB1Q14789 3259 aaKnown RBP6.04□□□□□ -1.44
USP54-217ENST00000498213 TMEM131LA2VDJ0 1609 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 PNMA6FA0A0J9YX94 578 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 HMX2A2RU54 273 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 MEGF11A6BM72 1044 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 GRIN3BO60391 1043 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 ADAMTS4O75173 837 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 SPINK2P20155 84 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 MAOBP27338 520 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 USP11P51784 963 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 HNRNPUQ00839 825 aaKnown RBP eCLIP6.04□□□□□ -1.44
USP54-217ENST00000498213 POU4F3Q15319 338 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 EXOSC6Q5RKV6 272 aaKnown RBP6.04□□□□□ -1.44
USP54-217ENST00000498213 DTHD1Q6ZMT9 781 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 BEND4Q6ZU67 534 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 FAM20CQ8IXL6 584 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 EPS8L3Q8TE67 593 aaKnown RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms