RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SNAP23O00161 211 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 CLCN6P51797 869 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 MTX1Q13505 466 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 NECTIN1Q15223 517 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 IQUBQ8NA54 791 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 RBM17Q96I25 401 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 EHBP1Q8NDI1 1231 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 M0R2C6 588 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 PSMA7O14818 248 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 ZNF654Q8IZM8 581 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 VEZTQ9HBM0 779 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 TFAP4Q01664 338 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 C11orf57Q6ZUT1 292 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 NLRP12P59046 1061 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 KMT5BQ4FZB7 885 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 TGFBRAP1Q8WUH2 860 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 PPP1R13BQ96KQ4 1090 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 PUS7LQ9H0K6 701 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 GPCPD1Q9NPB8 672 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 KIAA1468Q9P260 1216 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 SAMM50Q9Y512 469 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 OVOS2A0A0J9YW53 1432 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 OVOS2Q6IE36 1432 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 MAPK8IP1Q9UQF2 711 aa18.35■□□□□ 0.53
CCDC88B-209ENST00000494080 PARP1P09874 1014 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 GNA11P29992 359 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 GBP6Q6ZN66 633 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 TMEM87AQ8NBN3 555 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 POLR1AO95602 1720 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 OPA1O60313 960 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 IFFO1Q0D2I5 559 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 ZNF710Q8N1W2 664 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 STAMQ92783 540 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 CCDC113Q9H0I3 377 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 ALS2CR12Q96Q35 445 aa18.34■□□□□ 0.53
CCDC88B-209ENST00000494080 PNMA6AP0CW24 399 aaPredicted RBP18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 WDR78Q5VTH9 848 aa18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 PSDA5PKW4 1024 aaPredicted RBP18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 GBP2P32456 591 aaPredicted RBP18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 IGSF22Q8N9C0 903 aa18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 TTLL11Q8NHH1 800 aa18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 GOLGA5Q8TBA6 731 aa18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 DESI2Q9BSY9 194 aa18.33■□□□□ 0.53
CCDC88B-209ENST00000494080 UBE3CQ15386 1083 aa18.33■□□□□ 0.52
CCDC88B-209ENST00000494080 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-209ENST00000494080 AKR1B10O60218 316 aa18.33■□□□□ 0.52
CCDC88B-209ENST00000494080 ADKP55263 362 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-209ENST00000494080 SPAG1Q07617 926 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 NFE2L3Q9Y4A8 694 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 RBM26Q5T8P6 1007 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 GDAP1L1Q96MZ0 367 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 NAPGQ99747 312 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 NAA15Q9BXJ9 866 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 MKRN1Q9UHC7 482 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 TNKSO95271 1327 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 CYLC1P35663 651 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 GPHNQ9NQX3 736 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 RRP15Q9Y3B9 282 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 BTBD18B2RXH4 712 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 MYO1BO43795 1136 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 KRT79Q5XKE5 535 aa18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 FTOQ9C0B1 505 aaKnown RBP eCLIP18.32■□□□□ 0.52
CCDC88B-209ENST00000494080 CUTAO60888 179 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 CDC25BP30305 580 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 FAM114A1Q8IWE2 563 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NCAPD2Q15021 1401 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 IQSEC2Q5JU85 1478 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 INPP5BP32019 993 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 BRD3Q15059 726 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 DYDC1Q8WWB3 177 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 EYA3Q99504 573 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 KCNF1Q9H3M0 494 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 MORC2Q9Y6X9 1032 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 DLC1Q96QB1 1528 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NBPF26B4DH59 902 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 TTC38Q5R3I4 469 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NBPF14Q5TI25 921 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NBPF10Q6P3W6 841 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 CNGA4Q8IV77 575 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NBPF15Q8N660 670 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 PDE11AQ9HCR9 933 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 PPP2R2CQ9Y2T4 447 aa18.31■□□□□ 0.52
CCDC88B-209ENST00000494080 NDUFAB1O14561 156 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 PRKAB2O43741 272 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 KRT86O43790 486 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 FANCBQ8NB91 859 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 FBXO18Q8NFZ0 1043 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 ATG3Q9NT62 314 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 IRX5P78411 483 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 NSUN7Q8NE18 718 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 SMARCC2Q8TAQ2 1214 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 CCT6AP40227 531 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 GTF2IP78347 998 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 MFSD14BQ5SR56 506 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 SUSD4Q5VX71 490 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 ADALQ6DHV7 355 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 MMRN2Q9H8L6 949 aa18.3■□□□□ 0.52
CCDC88B-209ENST00000494080 MAP2K1Q02750 393 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 UIMC1Q96RL1 719 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms