RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 NAA15Q9BXJ9 866 aaKnown RBP13.17□□□□□ -0.3
RFC4-214ENST00000494047 RNF26Q9BY78 433 aaPredicted RBP13.17□□□□□ -0.3
RFC4-214ENST00000494047 XPO4Q9C0E2 1151 aaKnown RBP13.17□□□□□ -0.3
RFC4-214ENST00000494047 LY9Q9HBG7 655 aa13.17□□□□□ -0.3
RFC4-214ENST00000494047 NEDD4P46934 1319 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 PDS5AQ29RF7 1337 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 TCRBV5S4A2TA0A5A2 114 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 POLRMTO00411 1230 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 IFIT3O14879 490 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 SERPINC1P01008 464 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 MMP1P03956 469 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 TOP1P11387 765 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 YY1P25490 414 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 IGHMBP2P38935 993 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 UBASH3AP57075 661 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 AKAP17AQ02040 695 aaKnown RBP13.16□□□□□ -0.3
RFC4-214ENST00000494047 WTAPQ15007 396 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 PTPAQ15257 358 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 RTN1Q16799 776 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 KRBA2Q6ZNG9 492 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 TMC6Q7Z403 805 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 MPNDQ8N594 471 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 IGDCC4Q8TDY8 1250 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 MPHOSPH8Q99549 860 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 FTOQ9C0B1 505 aaKnown RBP eCLIP13.16□□□□□ -0.3
RFC4-214ENST00000494047 IFNKQ9P0W0 207 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 ANAPC4Q9UJX5 808 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 KCNH3Q9ULD8 1083 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 ZNF652Q9Y2D9 606 aa13.16□□□□□ -0.3
RFC4-214ENST00000494047 STX10O60499 249 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 NFIXQ14938 502 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 NTRK3Q16288 839 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 CHST3Q7LGC8 479 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 MICU3Q86XE3 530 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 DZIP3Q86Y13 1208 aaKnown RBP13.15□□□□□ -0.3
RFC4-214ENST00000494047 ZNF34Q8IZ26 560 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 IFNL3Q8IZI9 196 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 KRT222Q8N1A0 295 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 ESR2Q92731 530 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 FERMT2Q96AC1 680 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 MAP3K14Q99558 947 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.15□□□□□ -0.3
RFC4-214ENST00000494047 GREM2Q9H772 168 aa13.15□□□□□ -0.3
RFC4-214ENST00000494047 ZNF330Q9Y3S2 320 aaPredicted RBP13.15□□□□□ -0.3
RFC4-214ENST00000494047 UBN2Q6ZU65 1347 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 SCN7AQ01118 1682 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 DLEC1Q9Y238 1755 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 PTPREP23469 700 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 ETF1P62495 437 aaKnown RBP13.14□□□□□ -0.31
RFC4-214ENST00000494047 DDR1Q08345 913 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 NCAPHQ15003 741 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 CFAP100Q494V2 611 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 JAKMIP3Q5VZ66 844 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 NBPF11Q86T75 865 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 TBC1D10CQ8IV04 446 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 VSTM4Q8IW00 320 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 ENOX1Q8TC92 643 aaKnown RBP13.14□□□□□ -0.31
RFC4-214ENST00000494047 PPP1R13BQ96KQ4 1090 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 UBAC1Q9BSL1 405 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 DNAI1Q9UI46 699 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
RFC4-214ENST00000494047 MYH6P13533 1939 aa13.14□□□□□ -0.31
RFC4-214ENST00000494047 NRXN2Q9P2S2 1712 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 KIF28PB7ZC32 967 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 CAMTA2O94983 1202 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 SERPINB2P05120 415 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 TRAPPC10P48553 1259 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 TDO2P48775 406 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 FOSBP53539 338 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 SCARF1Q14162 830 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 POSTNQ15063 836 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 SMARCE1Q969G3 411 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 CCDC51Q96ER9 411 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 PKNOX2Q96KN3 472 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 SRPRBQ9Y5M8 271 aaKnown RBP13.13□□□□□ -0.31
RFC4-214ENST00000494047 MAST2Q6P0Q8 1798 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 MROH7-TTC4A0A0A0MT08 1334 aa13.13□□□□□ -0.31
RFC4-214ENST00000494047 B4E1Z4 1266 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 DDAH1O94760 285 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 CHGBP05060 677 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 TUBBP07437 444 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 HOXA7P31268 230 aaPredicted RBP13.12□□□□□ -0.31
RFC4-214ENST00000494047 SPAG1Q07617 926 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 BMS1Q14692 1282 aaKnown RBP13.12□□□□□ -0.31
RFC4-214ENST00000494047 CCDC178Q5BJE1 867 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 HOMER1Q86YM7 354 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 ANKRD20A12PQ8NF67 263 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 ZNF592Q92610 1267 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 SETDB2Q96T68 719 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 UTP14AQ9BVJ6 771 aaKnown RBP13.12□□□□□ -0.31
RFC4-214ENST00000494047 SLC26A6Q9BXS9 759 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 TMX1Q9H3N1 280 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 PIH1D3Q9NQM4 214 aaKnown RBP13.12□□□□□ -0.31
RFC4-214ENST00000494047 UTRNP46939 3433 aa13.12□□□□□ -0.31
RFC4-214ENST00000494047 DUOX1Q9NRD9 1551 aa13.11□□□□□ -0.31
RFC4-214ENST00000494047 POTEB2H3BUK9 544 aa13.11□□□□□ -0.31
RFC4-214ENST00000494047 YBX3P16989 372 aaKnown RBP eCLIP13.11□□□□□ -0.313e-7■■□□□ 11.9
RFC4-214ENST00000494047 TRIM14Q14142 442 aa13.11□□□□□ -0.31
RFC4-214ENST00000494047 FILIP1LQ4L180 1135 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms