RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 FAM229AH3BQW9 127 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 F13A1P00488 732 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 EIF4A1P60842 406 aaKnown RBP6.92□□□□□ -1.3
VPS41-214ENST00000490924 KRT32Q14532 448 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 DHX8Q14562 1220 aaKnown RBP6.92□□□□□ -1.3
VPS41-214ENST00000490924 SYCP1Q15431 976 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 AKAP4Q5JQC9 854 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 ARTNQ5T4W7 220 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 C1orf53Q5VUE5 145 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 ATL3Q6DD88 541 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 RBM43Q6ZSC3 357 aaKnown RBP6.92□□□□□ -1.3
VPS41-214ENST00000490924 PPP1R42Q7Z4L9 355 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 MYRIPQ8NFW9 859 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 FUCA2Q9BTY2 467 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 UBE2OQ9C0C9 1292 aaKnown RBP6.92□□□□□ -1.3
VPS41-214ENST00000490924 SCAND2PQ9GZW5 306 aaPredicted RBP6.92□□□□□ -1.3
VPS41-214ENST00000490924 ECHDC1Q9NTX5 307 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 USP21Q9UK80 565 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 PALD1Q9ULE6 856 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 SMC3Q9UQE7 1217 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 SNX14Q9Y5W7 946 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 CYP46A1Q9Y6A2 500 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 TMEM94Q12767 1356 aa6.92□□□□□ -1.3
VPS41-214ENST00000490924 EML1O00423 815 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 SRGAP3O43295 1099 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 SURF6O75683 361 aaKnown RBP6.91□□□□□ -1.3
VPS41-214ENST00000490924 SYT1P21579 422 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 HSPA1LP34931 641 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 SFSWAPQ12872 951 aaKnown RBP6.91□□□□□ -1.3
VPS41-214ENST00000490924 NCOA4Q13772 614 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 PCSK7Q16549 785 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.91□□□□□ -1.3
VPS41-214ENST00000490924 USP48Q86UV5 1035 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 LINS1Q8NG48 757 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 BHMTQ93088 406 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 ARXQ96QS3 562 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 EFCC1Q9HA90 598 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 DDX19AQ9NUU7 478 aaKnown RBP6.91□□□□□ -1.3
VPS41-214ENST00000490924 HYPKQ9NX55 129 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 NPHP3Q7Z494 1330 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 SLIT3O75094 1523 aa6.91□□□□□ -1.3
VPS41-214ENST00000490924 FOXO3O43524 673 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 DDX58O95786 925 aaKnown RBP6.9□□□□□ -1.3
VPS41-214ENST00000490924 ALBP02768 609 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 CCDC192P0DO97 292 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 ELNP15502 786 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 KRT85P78386 507 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 NECTIN1Q15223 517 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 GRIK4Q16099 956 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 PLEKHO1Q53GL0 409 aaPredicted RBP6.9□□□□□ -1.3
VPS41-214ENST00000490924 PRSS36Q5K4E3 855 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 NKAPLQ5M9Q1 402 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 USPL1Q5W0Q7 1092 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 KSR2Q6VAB6 950 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 RUFY3Q7L099 469 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 TNS4Q8IZW8 715 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 MAP4K1Q92918 833 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 RILPL2Q969X0 211 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 JPH1Q9HDC5 661 aaPredicted RBP6.9□□□□□ -1.3
VPS41-214ENST00000490924 DIAPH3Q9NSV4 1193 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 USP3Q9Y6I4 520 aa6.9□□□□□ -1.3
VPS41-214ENST00000490924 USP17L5A8MUK1 530 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 NEMFO60524 1076 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 H2AFB1P0C5Y9 115 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 H2AFB2P0C5Z0 115 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 CDC25BP30305 580 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 AK2P54819 239 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 TBCELQ5QJ74 424 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 UNC5CLQ8IV45 518 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 FBXL16Q8N461 479 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 TPCN2Q8NHX9 752 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 FAM200AQ8TCP9 573 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 SLC30A3Q99726 388 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 LLPHQ9BRT6 129 aaKnown RBP6.89□□□□□ -1.31
VPS41-214ENST00000490924 MTMR6Q9Y217 621 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 HCN4Q9Y3Q4 1203 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 KIF3AQ9Y496 699 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 ADCY9O60503 1353 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 MED23Q9ULK4 1368 aa6.89□□□□□ -1.31
VPS41-214ENST00000490924 STRCQ7RTU9 1775 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 UQCRHLA0A096LP55 91 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 CTAGE5O15320 804 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 PPP1R12BO60237 982 aaPredicted RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 TUBB4AP04350 444 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 PTMAP06454 111 aaKnown RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 UQCRHP07919 91 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 HMGB1P09429 215 aaKnown RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 EPB42P16452 691 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 ARID4AP29374 1257 aaPredicted RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 TEFQ10587 303 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 NOLC1Q14978 699 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS41-214ENST00000490924 TXNRD3Q86VQ6 643 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 SMAP1Q8IYB5 467 aaPredicted RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 ZNF295-AS1Q8N0V1 137 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 ZDHHC1Q8WTX9 485 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 KRTAP4-8Q9BYQ9 185 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 UPF3BQ9BZI7 483 aaKnown RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 ZSCAN16Q9H4T2 348 aaPredicted RBP6.88□□□□□ -1.31
VPS41-214ENST00000490924 KCND1Q9NSA2 647 aa6.88□□□□□ -1.31
VPS41-214ENST00000490924 PDRG1Q9NUG6 133 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms