RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 ZAP70P43403 619 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 SF3B2Q13435 895 aaKnown RBP8.56□□□□□ -1.04
VPS50-215ENST00000480943 TRIP4Q15650 581 aaPredicted RBP8.56□□□□□ -1.04
VPS50-215ENST00000480943 ERICH6Q7L0X2 663 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 HDGFL2Q7Z4V5 671 aaPredicted RBP8.56□□□□□ -1.04
VPS50-215ENST00000480943 VSIG10LQ86VR7 867 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS50-215ENST00000480943 PIK3R5Q8WYR1 880 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 NUP188Q5SRE5 1749 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 AATKQ6ZMQ8 1374 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 KAT6BQ8WYB5 2073 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 ZBTB42B2RXF5 422 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 NRLP54845 237 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 DEFB132Q7Z7B7 95 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 NME9Q86XW9 330 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 MYRFLQ96LU7 910 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 TESK2Q96S53 571 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 FAM83CQ9BQN1 747 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 SLC12A5Q9H2X9 1139 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 TLR7Q9NYK1 1049 aaKnown RBP8.55□□□□□ -1.04
VPS50-215ENST00000480943 CCDC39Q9UFE4 941 aa8.55□□□□□ -1.04
VPS50-215ENST00000480943 ANKRD26Q9UPS8 1709 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 RGPD3A6NKT7 1758 aaPredicted RBP8.54□□□□□ -1.04
VPS50-215ENST00000480943 RGPD4Q7Z3J3 1758 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 USP31Q70CQ4 1352 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 PSAPP07602 524 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 PLAURQ03405 335 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 TCP11L2Q8N4U5 519 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 KCNH5Q8NCM2 988 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 AGBL5Q8NDL9 886 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 KRTAP9-8Q9BYQ0 159 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 OVOS2A0A0J9YW53 1432 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 OVOS2Q6IE36 1432 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 CLSPNQ9HAW4 1339 aa8.54□□□□□ -1.04
VPS50-215ENST00000480943 NINLQ9Y2I6 1382 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 MAP2P11137 1827 aaKnown RBP8.53□□□□□ -1.04
VPS50-215ENST00000480943 ZBTB39O15060 712 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 MMP20O60882 483 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 PRNPP04156 253 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 EIF2AK2P19525 551 aaKnown RBP8.53□□□□□ -1.04
VPS50-215ENST00000480943 SSFA2P28290 1259 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 LILRA6Q6PI73 481 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 TOM1L2Q6ZVM7 507 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 HFE2Q6ZVN8 426 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 HELQQ8TDG4 1101 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 GPR152Q8TDT2 470 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 FAM46AQ96IP4 442 aaKnown RBP8.53□□□□□ -1.04
VPS50-215ENST00000480943 MUC3BQ9H195 1237 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 TERF2IPQ9NYB0 399 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 WDR17Q8IZU2 1322 aa8.53□□□□□ -1.04
VPS50-215ENST00000480943 WDR64B1ANS9 1081 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 B8ZZF3 427 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 SOX18P35713 384 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 SCNN1AP37088 669 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 TMF1P82094 1093 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 PDE3BQ13370 1112 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 CPSF6Q16630 551 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS50-215ENST00000480943 ARHGEF25Q86VW2 580 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 KSR1Q8IVT5 923 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 CACTIN-AS1Q8N1I8 211 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 NSUN5Q96P11 429 aaKnown RBP8.52□□□□□ -1.05
VPS50-215ENST00000480943 PUS7Q96PZ0 661 aaKnown RBP8.52□□□□□ -1.05
VPS50-215ENST00000480943 FNDC3AQ9Y2H6 1198 aaKnown RBP8.52□□□□□ -1.05
VPS50-215ENST00000480943 LEMD3Q9Y2U8 911 aa8.52□□□□□ -1.05
VPS50-215ENST00000480943 THRAP3Q9Y2W1 955 aaKnown RBP8.52□□□□□ -1.05
VPS50-215ENST00000480943 SHANK3Q9BYB0 1731 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 ANKRD36BQ8N2N9 1353 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 NHSQ6T4R5 1651 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 BIN1O00499 593 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 ZNF865P0CJ78 1059 aaPredicted RBP8.51□□□□□ -1.05
VPS50-215ENST00000480943 HOXA10P31260 410 aaPredicted RBP8.51□□□□□ -1.05
VPS50-215ENST00000480943 SETDB1Q15047 1291 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 IL22RA1Q8N6P7 574 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 SLC38A3Q99624 504 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 ATG3Q9NT62 314 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 TIMELESSQ9UNS1 1208 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 DISP2A7MBM2 1401 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 LRP5O75197 1615 aa8.51□□□□□ -1.05
VPS50-215ENST00000480943 OVOS2A0A0G2JMS6 1433 aa8.5□□□□□ -1.05
VPS50-215ENST00000480943 TRIM37O94972 964 aa8.5□□□□□ -1.05
VPS50-215ENST00000480943 HOXD8P13378 290 aaPredicted RBP8.5□□□□□ -1.05
VPS50-215ENST00000480943 FAM196AQ6ZSG2 479 aa8.5□□□□□ -1.05
VPS50-215ENST00000480943 BTAF1O14981 1849 aa8.5□□□□□ -1.05
VPS50-215ENST00000480943 DOT1LQ8TEK3 1739 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 LOC102724428A0A0B4J2F2 783 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 CARNS1A5YM72 827 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 J3QW42 95 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 GHRHP01286 108 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 SIK1P57059 783 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 DDB1Q16531 1140 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 ATCAYQ86WG3 371 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 FAM20CQ8IXL6 584 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 GTF3C2Q8WUA4 911 aaPredicted RBP8.49□□□□□ -1.05
VPS50-215ENST00000480943 RBSNQ9H1K0 784 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 KCNF1Q9H3M0 494 aa8.49□□□□□ -1.05
VPS50-215ENST00000480943 CCDC7Q96M83 1385 aa8.48□□□□□ -1.05
VPS50-215ENST00000480943 TNS2Q63HR2 1409 aa8.48□□□□□ -1.05
VPS50-215ENST00000480943 MSMPQ1L6U9 139 aa8.48□□□□□ -1.05
VPS50-215ENST00000480943 BEND4Q6ZU67 534 aa8.48□□□□□ -1.05
VPS50-215ENST00000480943 ACAD11Q709F0 780 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms