RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 USP17L5A8MUK1 530 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 CXCL11O14625 94 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 FOXP2O15409 715 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 ZKSCAN1P17029 563 aaPredicted RBP9.78□□□□□ -0.84
USP54-212ENST00000480210 MCCP23508 829 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 SHMT1P34896 483 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 ZNF157P51786 506 aaPredicted RBP9.78□□□□□ -0.84
USP54-212ENST00000480210 FMR1Q06787 632 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP54-212ENST00000480210 TRDNQ13061 729 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 PRKG1Q13976 671 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 ABCB5Q2M3G0 1257 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 TSGA10IPQ3SY00 556 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 DLK2Q6UY11 383 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.78□□□□□ -0.84
USP54-212ENST00000480210 TMEM179Q6ZVK1 233 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 CDAN1Q8IWY9 1227 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 MTA3Q9BTC8 594 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 MYH4Q9Y623 1939 aa9.78□□□□□ -0.84
USP54-212ENST00000480210 SPDYE5A6NIY4 337 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 C19orf81C9J6K1 198 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 SLC10A3P09131 477 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 CYP2D6P10635 497 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 PTPRAP18433 802 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 INPP5BP32019 993 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 MAP2K2P36507 400 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 PTH1RQ03431 593 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 NOGQ13253 232 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 PPIL2Q13356 520 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 VGLL4Q14135 290 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 KRT32Q14532 448 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 NECTIN1Q15223 517 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 IL27Q8NEV9 243 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 ESR2Q92731 530 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 WDR18Q9BV38 432 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 IL25Q9H293 177 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 SH2D4AQ9H788 454 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 DNAJC18Q9H819 358 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 KANSL2Q9H9L4 492 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 TCP11L1Q9NUJ3 509 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 SYNPO2Q9UMS6 1093 aa9.77□□□□□ -0.85
USP54-212ENST00000480210 RBM8AQ9Y5S9 174 aaKnown RBP9.77□□□□□ -0.85
USP54-212ENST00000480210 PTPRFP10586 1907 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 GREB1LQ9C091 1923 aaPredicted RBP9.76□□□□□ -0.85
USP54-212ENST00000480210 MANSC4A6NHS7 340 aaPredicted RBP9.76□□□□□ -0.85
USP54-212ENST00000480210 TSPY3P0CV98 308 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 TSPY8P0CW00 308 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 RASA1P20936 1047 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 GTF2A2P52657 109 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 USP14P54578 494 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 SPRYD7Q5W111 196 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 OTUD7BQ6GQQ9 843 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 MOB2Q70IA6 237 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 NEDD1Q8NHV4 660 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 NCOA7Q8NI08 942 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 ZKSCAN4Q969J2 545 aaPredicted RBP9.76□□□□□ -0.85
USP54-212ENST00000480210 DYNLL2Q96FJ2 89 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 WNK4Q96J92 1243 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 TTC14Q96N46 770 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 ZBTB21Q9ULJ3 1066 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP54-212ENST00000480210 SNCAIPQ9Y6H5 919 aa9.76□□□□□ -0.85
USP54-212ENST00000480210 PLIN4Q96Q06 1357 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 CYP2D7A0A087X1C5 515 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 TSPY2A6NKD2 308 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 MPHOSPH10O00566 681 aaKnown RBP9.75□□□□□ -0.85
USP54-212ENST00000480210 CYP21A2P08686 494 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 HMGB1P09429 215 aaKnown RBP9.75□□□□□ -0.85
USP54-212ENST00000480210 HSPA4P34932 840 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 CTDSPL2Q05D32 466 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 SREBF2Q12772 1141 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 SNAPC2Q13487 334 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 FASTKD5Q7L8L6 764 aaKnown RBP9.75□□□□□ -0.85
USP54-212ENST00000480210 IQCA1Q86XH1 822 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 RASAL3Q86YV0 1011 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 ZNF280CQ8ND82 737 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 KCNB2Q92953 911 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 OPTNQ96CV9 577 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 CAPNS2Q96L46 248 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 USP26Q9BXU7 913 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 ELP3Q9H9T3 547 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 ARHGEF10LQ9HCE6 1279 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 ZCCHC17Q9NP64 241 aaKnown RBP9.75□□□□□ -0.85
USP54-212ENST00000480210 NYAP2Q9P242 653 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 KCNH4Q9UQ05 1017 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 AFG3L2Q9Y4W6 797 aa9.75□□□□□ -0.85
USP54-212ENST00000480210 WDR33Q9C0J8 1336 aaKnown RBP9.75□□□□□ -0.85
USP54-212ENST00000480210 TESPA1A2RU30 521 aaPredicted RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 FAM196BA6NMK8 535 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 USP17L10C9JJH3 530 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 RANBP6O60518 1105 aaKnown RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 ALDH1A1P00352 501 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 GH2P01242 217 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 CETPP11597 493 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 PSMA5P28066 241 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 TM4SF4P48230 202 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 ANAPC15P60006 121 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 HAND2P61296 217 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 TFAP4Q01664 338 aa9.74□□□□□ -0.85
USP54-212ENST00000480210 SART3Q15020 963 aaKnown RBP9.74□□□□□ -0.85
USP54-212ENST00000480210 SLC4A8Q2Y0W8 1093 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms