RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 PHLDB3Q6NSJ2 640 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 E7EVH7 732 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 OPHN1O60890 802 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 MCM7P33993 719 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 DCTPP1Q9H773 170 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 ZBTB21Q9ULJ3 1066 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 TTF2Q9UNY4 1162 aaKnown RBP9.82□□□□□ -0.84
SYNE1-224ENST00000478916 I3L4J1 428 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 TCIRG1Q13488 830 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 ZSCAN26Q16670 478 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 CREB3L3Q68CJ9 461 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 DTHD1Q6ZMT9 781 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 GPHNQ9NQX3 736 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-224ENST00000478916 MROH5Q6ZUA9 1318 aa9.82□□□□□ -0.84
SYNE1-224ENST00000478916 PFDN1O60925 122 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 CNGA1P29973 690 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 SPATS2Q86XZ4 545 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 CCDC117Q8IWD4 279 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 FAM212AQ96EL1 285 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 TCEANC2Q96MN5 208 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 Q9H521 79 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 FAF1Q9UNN5 650 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 STK24Q9Y6E0 443 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 HHATQ5VTY9 493 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 CCDC65Q8IXS2 484 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 ABCA5Q8WWZ7 1642 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 SPATS2LQ9NUQ6 558 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 PHACTR3Q96KR7 559 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 TPX2Q9ULW0 747 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 DKC1O60832 514 aaKnown RBP eCLIP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 RLBP1P12271 317 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 ELF2Q15723 593 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 TBC1D22AQ8WUA7 517 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 LARSQ9P2J5 1176 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 TMEM2Q9UHN6 1383 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 MTMR3Q13615 1198 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 UTP14CQ5TAP6 766 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 CYP26C1Q6V0L0 522 aa9.81□□□□□ -0.84
SYNE1-224ENST00000478916 PRPF31Q8WWY3 499 aaKnown RBP9.81□□□□□ -0.84
SYNE1-224ENST00000478916 HIP1RO75146 1068 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 AGTPBP1Q9UPW5 1226 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 STK38LQ9Y2H1 464 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 PLXNC1O60486 1568 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 ERVV-2B6SEH9 535 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 DNAJC8O75937 253 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 VWA3BQ502W6 1294 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TRIM68Q6AZZ1 485 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TBC1D31Q96DN5 1066 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 CAPN7Q9Y6W3 813 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 SMIM24O75264 130 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 PPFIA4O75335 1185 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 RPL13P26373 211 aaKnown RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 CARD6Q9BX69 1037 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 RIPOR2Q9Y4F9 1068 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 SP4Q02446 784 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TNNI3KQ59H18 835 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TSPYL6Q8N831 410 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 GABPB2Q8TAK5 448 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 FPGT-TNNI3KV9GXZ4 949 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 GIPC1O14908 333 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 APOBRQ0VD83 1088 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 PAK2Q13177 524 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 RSPH3Q86UC2 560 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 DACT3Q96B18 629 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 FAM204AQ9H8W3 233 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 THEGQ9P2T0 379 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 CEP170Q5SW79 1584 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 ECM2O94769 699 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 SMTNP53814 917 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 LEO1Q8WVC0 666 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 LPIN2Q92539 896 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TMEM87BQ96K49 555 aa9.8□□□□□ -0.84
SYNE1-224ENST00000478916 TACO1Q9BSH4 297 aaKnown RBP9.8□□□□□ -0.84
SYNE1-224ENST00000478916 ZBED4O75132 1171 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 UBL4BQ8N7F7 174 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 GPCPD1Q9NPB8 672 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 LRRD1A4D1F6 860 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 MYL5Q02045 173 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 ANKRD20A3Q5VUR7 823 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 HAUS3Q68CZ6 603 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 PPP1R21Q6ZMI0 780 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 XAGE2Q96GT9 111 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 RABEP2Q9H5N1 569 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 XAB2Q9HCS7 855 aaKnown RBP9.79□□□□□ -0.84
SYNE1-224ENST00000478916 PTPDC1A2A3K4 754 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 DPH6Q7L8W6 267 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 NOP56O00567 594 aaKnown RBP9.79□□□□□ -0.84
SYNE1-224ENST00000478916 PPP1R2P41236 205 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 STX17P56962 302 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 TRIM35Q9UPQ4 493 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 HGSO14964 777 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-224ENST00000478916 IL13P35225 146 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 PEX19P40855 299 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 TNFAIP1Q13829 316 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 MORC4Q8TE76 937 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 TESK2Q96S53 571 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 FRMD4BQ9Y2L6 1034 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 PCDHB15Q9Y5E8 787 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 RNF40O75150 1001 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 LGSNQ5TDP6 509 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms