RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 SMARCE1Q969G3 411 aa20.71■□□□□ 0.91
CCM2-209ENST00000477605 UTP14AQ9BVJ6 771 aaKnown RBP20.71■□□□□ 0.91
CCM2-209ENST00000477605 DOCK2Q92608 1830 aa20.71■□□□□ 0.91
CCM2-209ENST00000477605 ZNF18P17022 549 aa20.71■□□□□ 0.91
CCM2-209ENST00000477605 BMP6P22004 513 aa20.71■□□□□ 0.91
CCM2-209ENST00000477605 CCDC152Q4G0S7 254 aa20.71■□□□□ 0.91
CCM2-209ENST00000477605 RNF26Q9BY78 433 aaPredicted RBP20.71■□□□□ 0.91
CCM2-209ENST00000477605 XBP1P17861 261 aa20.7■□□□□ 0.9
CCM2-209ENST00000477605 ERCC5P28715 1186 aaPredicted RBP20.7■□□□□ 0.9
CCM2-209ENST00000477605 GUCY1A2P33402 732 aa20.7■□□□□ 0.9
CCM2-209ENST00000477605 EIF5P55010 431 aaKnown RBP20.7■□□□□ 0.9
CCM2-209ENST00000477605 LCORLQ8N3X6 602 aa20.7■□□□□ 0.9
CCM2-209ENST00000477605 THRAP3Q9Y2W1 955 aaKnown RBP20.7■□□□□ 0.9
CCM2-209ENST00000477605 ITGB4P16144 1822 aa20.7■□□□□ 0.9
CCM2-209ENST00000477605 STX10O60499 249 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 H2AFXP16104 143 aaPredicted RBP20.69■□□□□ 0.9
CCM2-209ENST00000477605 IGHMBP2P38935 993 aaKnown RBP20.69■□□□□ 0.9
CCM2-209ENST00000477605 FAM193AP78312 1265 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 FBXO38Q6PIJ6 1188 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 TRIM65Q6PJ69 517 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 REXO1L1PQ8IX06 675 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 SPATA20Q8TB22 786 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 EXOC5O00471 708 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 BMP15O95972 392 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 TPM1P09493 284 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 PDE4BQ07343 736 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 SUSD4Q5VX71 490 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 ZNF654Q8IZM8 581 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 UBAC1Q9BSL1 405 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 KCNJ14Q9UNX9 436 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 ECM29Q5VYK3 1845 aa20.69■□□□□ 0.9
CCM2-209ENST00000477605 POLR2DO15514 142 aaKnown RBP20.68■□□□□ 0.9
CCM2-209ENST00000477605 PRKAB2O43741 272 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 NUP98P52948 1817 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 PPARAQ07869 468 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 FAM182BQ5T319 152 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 TMEM139Q8IV31 216 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 ESR2Q92731 530 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 BCL11BQ9C0K0 894 aaPredicted RBP20.68■□□□□ 0.9
CCM2-209ENST00000477605 SERTAD1Q9UHV2 236 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 RRP12Q5JTH9 1297 aaKnown RBP20.68■□□□□ 0.9
CCM2-209ENST00000477605 SPECC1LQ69YQ0 1117 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 TOMM22Q9NS69 142 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 INTS13Q9NVM9 706 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 AATFQ9NY61 560 aaKnown RBP eCLIP20.68■□□□□ 0.9
CCM2-209ENST00000477605 DNAI1Q9UI46 699 aa20.68■□□□□ 0.9
CCM2-209ENST00000477605 UBE2Q2LH0YL09 131 aa20.67■□□□□ 0.9
CCM2-209ENST00000477605 PCP11498 1178 aaKnown RBP20.67■□□□□ 0.9
CCM2-209ENST00000477605 LRP2BPQ9P2M1 347 aa20.67■□□□□ 0.9
CCM2-209ENST00000477605 NFE2L3Q9Y4A8 694 aa20.67■□□□□ 0.9
CCM2-209ENST00000477605 TMEM232C9JQI7 657 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 ACTN4O43707 911 aaKnown RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 CDK11BP21127 795 aaKnown RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 PLCD1P51178 756 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 AKAP17AQ02040 695 aaKnown RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 BMS1Q14692 1282 aaKnown RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 SEC23AQ15436 765 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 CDC5LQ99459 802 aaKnown RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 BAG1Q99933 345 aaPredicted RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.66■□□□□ 0.9
CCM2-209ENST00000477605 PCDHB6Q9Y5E3 794 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 V9GYY5 206 aaPredicted RBP20.66■□□□□ 0.9
CCM2-209ENST00000477605 FOXN1O15353 648 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 BCAMP50895 628 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 CCDC87Q9NVE4 849 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 PPP2R2CQ9Y2T4 447 aa20.66■□□□□ 0.9
CCM2-209ENST00000477605 TRIM75PA6NK02 468 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 RBM28Q9NW13 759 aaKnown RBP20.65■□□□□ 0.9
CCM2-209ENST00000477605 MYO5AQ9Y4I1 1855 aaKnown RBP20.65■□□□□ 0.9
CCM2-209ENST00000477605 PRPF3O43395 683 aaKnown RBP20.65■□□□□ 0.9
CCM2-209ENST00000477605 CALM1P0DP23 149 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 CALM2P0DP24 149 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 CALM3P0DP25 149 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 ERCC6LQ2NKX8 1250 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 CREBRFQ8IUR6 639 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 FERMT2Q96AC1 680 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 SEC31BQ9NQW1 1179 aa20.65■□□□□ 0.9
CCM2-209ENST00000477605 GNL3LQ9NVN8 582 aaKnown RBP20.65■□□□□ 0.9
CCM2-209ENST00000477605 ARGLU1Q9NWB6 273 aaPredicted RBP20.65■□□□□ 0.9
CCM2-209ENST00000477605 BCORQ6W2J9 1755 aa20.64■□□□□ 0.9
CCM2-209ENST00000477605 CYP7A1P22680 504 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 GRIN1Q05586 938 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 NR5A1Q13285 461 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 SPECC1Q5M775 1068 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 INTS5Q6P9B9 1019 aaKnown RBP20.64■□□□□ 0.89
CCM2-209ENST00000477605 UBXN4Q92575 508 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 ZKSCAN3Q9BRR0 538 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 ZNF804BA4D1E1 1349 aa20.64■□□□□ 0.89
CCM2-209ENST00000477605 EFCAB8A8MWE9 144 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 PRR29P0C7W0 189 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 FMR1Q06787 632 aaKnown RBP eCLIP20.63■□□□□ 0.89
CCM2-209ENST00000477605 NR1I3Q14994 352 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 TC2NQ8N9U0 490 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 NUP133Q8WUM0 1156 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 CSRNP2Q9H175 543 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 CABP5Q9NP86 173 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 TAOK2Q9UL54 1235 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 MAGEB6P1A0A0J9YX57 407 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 VWA3AA6NCI4 1184 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 SEMA3EO15041 775 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms