RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 CCDC196A0A1B0GTZ2 297 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 SH2B2O14492 632 aaPredicted RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 LETM1O95202 739 aaPredicted RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 BAG3O95817 575 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 PDIA3P30101 505 aaKnown RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 TDO2P48775 406 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 KRT85P78386 507 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 SCRN1Q12765 414 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 SLC15A2Q16348 729 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 CCDC178Q5BJE1 867 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 CC2D2BQ6DHV5 1058 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 TTLL5Q6EMB2 1281 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 MFSD6Q6ZSS7 791 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 COL23A1Q86Y22 540 aaPredicted RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 LCORLQ8N3X6 602 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 NSUN7Q8NE18 718 aaKnown RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 MASTLQ96GX5 879 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 SCAND2PQ9GZW5 306 aaPredicted RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 EPB41L4AQ9HCS5 686 aaPredicted RBP7.81□□□□□ -1.16
LDB3-206ENST00000477489 ATP6V0A2Q9Y487 856 aa7.81□□□□□ -1.16
LDB3-206ENST00000477489 STK36Q9NRP7 1315 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 TCHHQ07283 1943 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ERICH2A1L162 156 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 FSD2A1L4K1 749 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 PPEF1O14829 653 aaPredicted RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 ORC4O43929 436 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 LDHBP07195 334 aaKnown RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 SRGNP10124 158 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 APLP1P51693 650 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ANTXR2P58335 489 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ZNF445P59923 1031 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 UBE2HP62256 183 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 FKBP1AP62942 108 aaKnown RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 PPARAQ07869 468 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ZNF827Q17R98 1081 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 SLFNL1Q499Z3 407 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 STYK1Q6J9G0 422 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 SYNE3Q6ZMZ3 975 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 DZIP1Q86YF9 867 aaKnown RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 AMOTL1Q8IY63 956 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 NECAB1Q8N987 351 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ZNF526Q8TF50 670 aaPredicted RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 WASF1Q92558 559 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ESR2Q92731 530 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 EYA3Q99504 573 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 NOL10Q9BSC4 688 aaKnown RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 COA1Q9GZY4 146 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ARMT1Q9H993 441 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ZNF287Q9HBT7 754 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 CFAP45Q9UL16 551 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 ROBO3Q96MS0 1386 aa7.8□□□□□ -1.16
LDB3-206ENST00000477489 COL11A2P13942 1736 aaPredicted RBP7.8□□□□□ -1.16
LDB3-206ENST00000477489 KLF18A0A0U1RQI7 1052 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 PTPDC1A2A3K4 754 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 GOLGA6L3A6NEY3 463 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 H3BQV1 296 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 SNAP23O00161 211 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 CPLX1O14810 134 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 PRPF40AO75400 957 aaKnown RBP7.79□□□□□ -1.16
LDB3-206ENST00000477489 RGS20O76081 388 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 UFL1O94874 794 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 CALM1P0DP23 149 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 CALM2P0DP24 149 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 CALM3P0DP25 149 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 YBX3P16989 372 aaKnown RBP eCLIP7.79□□□□□ -1.16
LDB3-206ENST00000477489 MRE11P49959 708 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 HAND2P61296 217 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 GPSM2P81274 684 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 MECOMQ03112 1051 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 APOBRQ0VD83 1088 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 SMIM5Q71RC9 77 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 TBC1D10CQ8IV04 446 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 TBC1D16Q8TBP0 767 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 IGDCC4Q8TDY8 1250 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 SLC16A10Q8TF71 515 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 TCEANC2Q96MN5 208 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 CD209Q9NNX6 404 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 NSFL1CQ9UNZ2 370 aaKnown RBP7.79□□□□□ -1.16
LDB3-206ENST00000477489 FOCADQ5VW36 1801 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 MYH2Q9UKX2 1941 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 NAV1Q8NEY1 1877 aa7.79□□□□□ -1.16
LDB3-206ENST00000477489 GOLGB1Q14789 3259 aaKnown RBP7.78□□□□□ -1.16
LDB3-206ENST00000477489 VPS37CA5D8V6 355 aaPredicted RBP7.78□□□□□ -1.16
LDB3-206ENST00000477489 GOLGA8BA8MQT2 603 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 ZBTB43O43298 467 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 MMP10P09238 476 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 PDE4BQ07343 736 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 APOA5Q6Q788 366 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 BRAPQ7Z569 592 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 IQCA1Q86XH1 822 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 FAM177A1Q8N128 213 aaPredicted RBP7.78□□□□□ -1.16
LDB3-206ENST00000477489 NLGN2Q8NFZ4 835 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 CNKSR1Q969H4 720 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 ZNF396Q96N95 335 aaPredicted RBP7.78□□□□□ -1.16
LDB3-206ENST00000477489 MAP3K14Q99558 947 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 UBAC1Q9BSL1 405 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 MRIQ9BWK5 157 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 SLC12A7Q9Y666 1083 aa7.78□□□□□ -1.16
LDB3-206ENST00000477489 BAZ2AQ9UIF9 1905 aaKnown RBP7.78□□□□□ -1.16
LDB3-206ENST00000477489 DDX60LQ5H9U9 1706 aaKnown RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms