RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 HLA-DOAP06340 250 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 BACE1P56817 501 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 EVX2Q03828 476 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 PRKCZQ05513 592 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 NBPF11Q86T75 865 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 EHD4Q9H223 541 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 BOLA2Q9H3K6 86 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 AS3MTQ9HBK9 375 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 GINM1Q9NU53 330 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 MYPNQ86TC9 1320 aa22.55■■□□□ 1.2
COL7A1-209ENST00000474432 MAGEB6P1A0A0J9YX57 407 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 CHGBP05060 677 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 PLCD1P51178 756 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 FCGRTP55899 365 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 MTMR2Q13614 643 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 HAUS7Q99871 368 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 PAG1Q9NWQ8 432 aa22.54■■□□□ 1.2
COL7A1-209ENST00000474432 HOXD10P28358 340 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 LCORLQ8N3X6 602 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 ANKRD13CQ8N6S4 541 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 SMCR8Q8TEV9 937 aaPredicted RBP22.53■■□□□ 1.2
COL7A1-209ENST00000474432 LRRCC1Q9C099 1032 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 ASCC2Q9H1I8 757 aaPredicted RBP22.53■■□□□ 1.2
COL7A1-209ENST00000474432 SERPINB13Q9UIV8 391 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 MYH7P12883 1935 aa22.53■■□□□ 1.2
COL7A1-209ENST00000474432 MYCP01106 439 aaPredicted RBP22.52■■□□□ 1.2
COL7A1-209ENST00000474432 GABPAQ06546 454 aa22.52■■□□□ 1.2
COL7A1-209ENST00000474432 MTFR1Q15390 333 aa22.52■■□□□ 1.2
COL7A1-209ENST00000474432 DCTPP1Q9H773 170 aa22.52■■□□□ 1.2
COL7A1-209ENST00000474432 PNMA3Q9UL41 463 aa22.52■■□□□ 1.2
COL7A1-209ENST00000474432 GH2P01242 217 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 HOXA7P31268 230 aaPredicted RBP22.51■■□□□ 1.19
COL7A1-209ENST00000474432 GRK4P32298 578 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 SHMT1P34896 483 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 ADD2P35612 726 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 FAM110CQ1W6H9 321 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 TTC6Q86TZ1 520 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 TMEM106CQ9BVX2 250 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 TRIM34Q9BYJ4 488 aa22.51■■□□□ 1.19
COL7A1-209ENST00000474432 C19orf81C9J6K1 198 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 USP17L10C9JJH3 530 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 POTEEQ6S8J3 1075 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 RAET1EQ8TD07 263 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 SDR42E1Q8WUS8 393 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 CRNKL1Q9BZJ0 848 aaKnown RBP22.5■■□□□ 1.19
COL7A1-209ENST00000474432 EMILIN3Q9NT22 766 aa22.5■■□□□ 1.19
COL7A1-209ENST00000474432 GUCY1A2P33402 732 aa22.49■■□□□ 1.19
COL7A1-209ENST00000474432 GCLCP48506 637 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-209ENST00000474432 FLT3LGP49771 235 aa22.49■■□□□ 1.19
COL7A1-209ENST00000474432 PABPC4Q13310 644 aaKnown RBP eCLIP22.49■■□□□ 1.19
COL7A1-209ENST00000474432 P2RX7Q99572 595 aaKnown RBP22.49■■□□□ 1.19
COL7A1-209ENST00000474432 ARMT1Q9H993 441 aa22.49■■□□□ 1.19
COL7A1-209ENST00000474432 DCP1AQ9NPI6 582 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-209ENST00000474432 PCDHB15Q9Y5E8 787 aa22.49■■□□□ 1.19
COL7A1-209ENST00000474432 PLXNB2O15031 1838 aa22.49■■□□□ 1.19
COL7A1-209ENST00000474432 BAZ2AQ9UIF9 1905 aaKnown RBP22.49■■□□□ 1.19
COL7A1-209ENST00000474432 PRKAB2O43741 272 aa22.48■■□□□ 1.19
COL7A1-209ENST00000474432 PEX10O60683 326 aa22.48■■□□□ 1.19
COL7A1-209ENST00000474432 PRPF38BQ5VTL8 546 aaKnown RBP22.48■■□□□ 1.19
COL7A1-209ENST00000474432 MORF4L1Q9UBU8 362 aa22.48■■□□□ 1.19
COL7A1-209ENST00000474432 TNPO2O14787 897 aaKnown RBP22.47■■□□□ 1.19
COL7A1-209ENST00000474432 CYP2D6P10635 497 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 IRF5Q13568 498 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 CERKLQ49MI3 558 aaPredicted RBP22.47■■□□□ 1.19
COL7A1-209ENST00000474432 SHISA4Q96DD7 197 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 TXNRD2Q9NNW7 524 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 MCM9Q9NXL9 1143 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 TMOD4Q9NZQ9 345 aa22.47■■□□□ 1.19
COL7A1-209ENST00000474432 SMIM22K7EJ46 135 aa22.46■■□□□ 1.19
COL7A1-209ENST00000474432 MBD4O95243 580 aa22.46■■□□□ 1.19
COL7A1-209ENST00000474432 POLR3DP05423 398 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-209ENST00000474432 UBE3CQ15386 1083 aa22.46■■□□□ 1.19
COL7A1-209ENST00000474432 ACER1Q8TDN7 264 aa22.46■■□□□ 1.19
COL7A1-209ENST00000474432 C12orf42Q96LP6 360 aa22.46■■□□□ 1.19
COL7A1-209ENST00000474432 ADCY3O60266 1144 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 ELNP15502 786 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 ABCB5Q2M3G0 1257 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 USP17L2Q6R6M4 530 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 SLAIN1Q8ND83 568 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 ECHDC1Q9NTX5 307 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 RBPJLQ9UBG7 517 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 GJD2Q9UKL4 321 aa22.45■■□□□ 1.18
COL7A1-209ENST00000474432 CCL5P13501 91 aa22.44■■□□□ 1.18
COL7A1-209ENST00000474432 RRP1P56182 461 aaKnown RBP22.44■■□□□ 1.18
COL7A1-209ENST00000474432 HERVK_113P62684 666 aa22.44■■□□□ 1.18
COL7A1-209ENST00000474432 SLC44A5Q8NCS7 719 aa22.44■■□□□ 1.18
COL7A1-209ENST00000474432 PXYLP1Q8TE99 480 aa22.44■■□□□ 1.18
COL7A1-209ENST00000474432 IRX3P78415 501 aaPredicted RBP22.43■■□□□ 1.18
COL7A1-209ENST00000474432 RAB3GAP1Q15042 981 aa22.43■■□□□ 1.18
COL7A1-209ENST00000474432 TSHZ3Q63HK5 1081 aa22.43■■□□□ 1.18
COL7A1-209ENST00000474432 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.43■■□□□ 1.185e-6■■■■■ 34.6
COL7A1-209ENST00000474432 KIAA1683Q9H0B3 1180 aa22.43■■□□□ 1.18
COL7A1-209ENST00000474432 PUS7LQ9H0K6 701 aaKnown RBP22.43■■□□□ 1.18
COL7A1-209ENST00000474432 MYH8P13535 1937 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 GJB1P08034 283 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 SEPT2Q15019 361 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 Q3C1V9 767 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 COA7Q96BR5 231 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 DYNLL2Q96FJ2 89 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 UNC93B1Q9H1C4 597 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms