RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 RGPD5Q99666 1765 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 TIAM2Q8IVF5 1701 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 MFAP3LO75121 409 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 PPP1R2P41236 205 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 ZC3H6P61129 1189 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 NTRK3Q16288 839 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 AKNAD1Q5T1N1 836 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 ISM2Q6H9L7 571 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 IGDCC4Q8TDY8 1250 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 PUS7LQ9H0K6 701 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 LY9Q9HBG7 655 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 ZNHIT6Q9NWK9 470 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 SERTAD1Q9UHV2 236 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 TMEM232C9JQI7 657 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 CYP27B1O15528 508 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 SLC5A1P13866 664 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 ARID4AP29374 1257 aaPredicted RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 HOXA7P31268 230 aaPredicted RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 LMAN1P49257 510 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 RAD51AP2Q09MP3 1159 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 LDHAL6AQ6ZMR3 332 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 NOC3LQ8WTT2 800 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 CCDC47Q96A33 483 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 ORAI2Q96SN7 254 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 ADAM21Q9UKJ8 722 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 MROH5Q6ZUA9 1318 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 B4E1Z4 1266 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ATF3P18847 181 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 TRAPPC10P48553 1259 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 KRT83P78385 493 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 STIM1Q13586 685 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 PROSER2Q86WR7 435 aaPredicted RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 ZCRB1Q8TBF4 217 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 STAG1Q8WVM7 1258 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 WDR24Q96S15 920 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 UBAC1Q9BSL1 405 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 PAPPAQ13219 1627 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 COL18A1P39060 1754 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 IDH1O75874 414 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 SEC31AO94979 1220 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 STARD3NLO95772 234 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 MYL1P05976 194 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 PDE6AP16499 860 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 KRT2P35908 639 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ADKP55263 362 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 NKX1-1Q15270 411 aaPredicted RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 ZNF569Q5MCW4 686 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 WDR93Q6P2C0 686 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 TOGARAM2Q6ZUX3 1019 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 LPIN2Q92539 896 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ZNF594Q96JF6 807 aaPredicted RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 CLIC6Q96NY7 704 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ZBTB3Q9H5J0 574 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 HAUS4Q9H6D7 363 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 GPHNQ9NQX3 736 aaPredicted RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 TMEM51Q9NW97 253 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ADAMTSL3P82987 1691 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 TNS3Q68CZ2 1445 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 GLI3P10071 1580 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 TARSL2A2RTX5 802 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 NBPF26B4DH59 902 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 FOXP2O15409 715 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ACTN4O43707 911 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 CHGBP05060 677 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 PUM3Q15397 648 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 NBPF14Q5TI25 921 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 CDKAL1Q5VV42 579 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 NBPF10Q6P3W6 841 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 TTLL7Q6ZT98 887 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 CYB5R4Q7L1T6 521 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 TBC1D10CQ8IV04 446 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 NBPF15Q8N660 670 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 INTS13Q9NVM9 706 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ADD3Q9UEY8 706 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 LIMA1Q9UHB6 759 aaKnown RBP6.93□□□□□ -1.3
HERC4-209ENST00000473533 LRP6O75581 1613 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 PNPLA7Q6ZV29 1317 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 ZNF532Q9HCE3 1301 aa6.93□□□□□ -1.3
HERC4-209ENST00000473533 CAPN2P17655 700 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 CDC27P30260 824 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 KARSQ15046 597 aaKnown RBP6.92□□□□□ -1.3
HERC4-209ENST00000473533 ZNF662Q6ZS27 426 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 STK11IPQ8N1F8 1099 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 LRRN4CLQ8ND94 238 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 ESR2Q92731 530 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 PHKBQ93100 1093 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 STRBPQ96SI9 672 aaKnown RBP6.92□□□□□ -1.3
HERC4-209ENST00000473533 NUP58Q9BVL2 599 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 ST7Q9NRC1 585 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 RWDD2AQ9UIY3 292 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 TNS2Q63HR2 1409 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 A0A0U1RQG5 324 aaPredicted RBP6.92□□□□□ -1.3
HERC4-209ENST00000473533 N4BP3O15049 544 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 ADORA1P30542 326 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 TDO2P48775 406 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 BEND6Q5SZJ8 279 aaPredicted RBP6.92□□□□□ -1.3
HERC4-209ENST00000473533 IFNL3Q8IZI9 196 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 CRACR2BQ8N4Y2 399 aaPredicted RBP6.92□□□□□ -1.3
HERC4-209ENST00000473533 NEK11Q8NG66 645 aa6.92□□□□□ -1.3
HERC4-209ENST00000473533 PUS3Q9BZE2 481 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms