RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CFAP36Q96G28 342 aa9.94□□□□□ -0.82
COL6A3-210ENST00000473258 PACSIN2Q9UNF0 486 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-210ENST00000473258 CFAP73A6NFT4 308 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 SART1O43290 800 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CTNND1O60716 968 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 SUPT3HO75486 399 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 POLR3DP05423 398 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 MECOMQ03112 1051 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 SEL1L2Q5TEA6 688 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 C16orf71Q8IYS4 520 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 KCNV2Q8TDN2 545 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 LARP6Q9BRS8 491 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 GIPC1O14908 333 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 DIAPH2O60879 1101 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 MCM7P33993 719 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 GAS2L3Q86XJ1 694 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 TBC1D22AQ8WUA7 517 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 RAB34Q9BZG1 259 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 TEKT2Q9UIF3 430 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 KIF23Q02241 960 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 TWISTNBQ3B726 338 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CCDC184Q52MB2 194 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 NOX5Q96PH1 765 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 RAD21L1Q9H4I0 556 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 VPS37BQ9H9H4 285 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CCPG1Q9ULG6 757 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 MIA2Q96PC5 1412 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 H0Y3Z8 333 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 DDHD2O94830 711 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 HNRNPH1P31943 449 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 BICDL1Q6ZP65 573 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 AFAP1L2Q8N4X5 818 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 HOOK2Q96ED9 719 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 TRAK1Q9UPV9 953 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 NUP155O75694 1391 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 S100A9P06702 114 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 DRP2Q13474 957 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CASP8Q14790 479 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 MTA3Q9BTC8 594 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 RAB17Q9H0T7 212 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CSRNP2Q9H175 543 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 CNOT10Q9H9A5 744 aaKnown RBP9.93□□□□□ -0.82
COL6A3-210ENST00000473258 PARP2Q9UGN5 583 aa9.93□□□□□ -0.82
COL6A3-210ENST00000473258 AP1G2O75843 785 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 GLRX3O76003 335 aaKnown RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 FMNL1O95466 1100 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 SLFN5Q08AF3 891 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ARHGAP44Q17R89 818 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 RSBN1LQ6PCB5 846 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 HDDC2Q7Z4H3 204 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 EGFL6Q8IUX8 553 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 EFHD1Q9BUP0 239 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 PARD6BQ9BYG5 372 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 LMBRD1Q9NUN5 540 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 CDC23Q9UJX2 597 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TPCN1Q9ULQ1 816 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 GNAT1P11488 350 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 GOLGA8FQ08AF8 430 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 GOLGA8DPQ0D2H9 430 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 DDX54Q8TDD1 881 aaKnown RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ZNF428Q96B54 188 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 LTV1Q96GA3 475 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 KANK1Q14678 1352 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TARSL2A2RTX5 802 aaKnown RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 LSM1O15116 133 aaKnown RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 IFNAR2P48551 515 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 RAD23BP54727 409 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 RNASE9P60153 205 aaKnown RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 NFRKBQ6P4R8 1299 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 KCTD17Q8N5Z5 321 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TRIM63Q969Q1 353 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ORC3Q9UBD5 711 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ANKRD36BQ8N2N9 1353 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 SMAPO00193 183 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 SPAG7O75391 227 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TRIM16O95361 564 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 DDIT3P35638 169 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 CTCFP49711 727 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-210ENST00000473258 ARHGAP4P98171 946 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 RINLQ6ZS11 566 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 SESTD1Q86VW0 696 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 LRRC8AQ8IWT6 810 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 AIDAQ96BJ3 306 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TMEM165Q9HC07 324 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 TMEM63CQ9P1W3 806 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 EPS15L1Q9UBC2 864 aa9.92□□□□□ -0.82
COL6A3-210ENST00000473258 PABPN1LA6NDY0 278 aaKnown RBP9.91□□□□□ -0.82
COL6A3-210ENST00000473258 FAM200BP0CF97 657 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 ARPC4P59998 168 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 LGSNQ5TDP6 509 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 TTLL11Q8NHH1 800 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 PRELID1Q9Y255 219 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 RB1CC1Q8TDY2 1594 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 NR1D1P20393 614 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 TBL3Q12788 808 aaKnown RBP9.91□□□□□ -0.82
COL6A3-210ENST00000473258 NNTQ13423 1086 aa9.91□□□□□ -0.82
COL6A3-210ENST00000473258 TMEM154Q6P9G4 183 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms