RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 POLR3GO15318 223 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 U2AF2P26368 475 aaKnown RBP eCLIP13.22□□□□□ -0.29
NPHP4-204ENST00000460696 CYB5R4Q7L1T6 521 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 LARGE2Q8N3Y3 721 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 FANCLQ9NW38 375 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 TCEAL9Q9UHQ7 104 aa13.22□□□□□ -0.29
NPHP4-204ENST00000460696 SERPINB2P05120 415 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 CALML3P27482 149 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 EXOSC10Q01780 885 aaKnown RBP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 SKIDA1Q1XH10 827 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 ZHX1Q9UKY1 873 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 MEGF6O75095 1541 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 CYP19A1P11511 503 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 TNNT3P45378 269 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 PRKG1Q13976 671 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 TTC38Q5R3I4 469 aa13.21□□□□□ -0.29
NPHP4-204ENST00000460696 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 BAG1Q99933 345 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-204ENST00000460696 GNAQP50148 359 aa13.21□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC43Q96MW1 224 aaKnown RBP13.21□□□□□ -0.3
NPHP4-204ENST00000460696 RBM28Q9NW13 759 aaKnown RBP13.21□□□□□ -0.3
NPHP4-204ENST00000460696 RNF216Q9NWF9 866 aaPredicted RBP13.21□□□□□ -0.3
NPHP4-204ENST00000460696 GSTO1P78417 241 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 TFAP4Q01664 338 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 MB21D2Q8IYB1 491 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 FNBP4Q8N3X1 1017 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 VPS16Q9H269 839 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 ALDH8A1Q9H2A2 487 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 CTDP1Q9Y5B0 961 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 ST3GAL1Q11201 340 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 TRIM28Q13263 835 aaKnown RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 DTHD1Q6ZMT9 781 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 ARHGEF1Q92888 912 aaKnown RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 RIPOR2Q9Y4F9 1068 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 KDM6AO15550 1401 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 KRBA2Q6ZNG9 492 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC148Q8NFR7 591 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 UBE2Q2Q8WVN8 375 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 CALML4Q96GE6 196 aa13.2□□□□□ -0.3
NPHP4-204ENST00000460696 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC94Q9BW85 323 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-204ENST00000460696 GOLGA6L9A6NEM1 432 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ERVV-1B6SEH8 477 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 TMEM266Q2M3C6 531 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ZNF804AQ7Z570 1209 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 SLF2Q8IX21 1173 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ZSCAN10Q96SZ4 725 aaPredicted RBP13.19□□□□□ -0.3
NPHP4-204ENST00000460696 BLZF1Q9H2G9 400 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 DNA2P51530 1060 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ASIC1P78348 528 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 LETM2Q2VYF4 491 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ERFEQ4G0M1 354 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 MAPKAPK5Q8IW41 473 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 GRAMD1CQ8IYS0 662 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 MLKLQ8NB16 471 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 FLAD1Q8NFF5 587 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ACBD3Q9H3P7 528 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 UBR1Q8IWV7 1749 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 ADKP55263 362 aaKnown RBP13.19□□□□□ -0.3
NPHP4-204ENST00000460696 EIF6P56537 245 aaKnown RBP13.19□□□□□ -0.3
NPHP4-204ENST00000460696 GOLGA8FQ08AF8 430 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 GOLGA8DPQ0D2H9 430 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 FKBP15Q5T1M5 1219 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 KCNB2Q92953 911 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 IMPACTQ9P2X3 320 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 NEDD4P46934 1319 aa13.19□□□□□ -0.3
NPHP4-204ENST00000460696 TRIM21P19474 475 aaKnown RBP13.18□□□□□ -0.3
NPHP4-204ENST00000460696 CDC27P30260 824 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 CTAGE1Q96RT6 745 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 PYM1Q9BRP8 204 aaKnown RBP13.18□□□□□ -0.3
NPHP4-204ENST00000460696 RAB34Q9BZG1 259 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 RMND1Q9NWS8 449 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 ERLIN1O75477 346 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 CTDNEP1O95476 244 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 ATP1A3P13637 1013 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 ZNF76P36508 570 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 ELF2Q15723 593 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 TEX11Q8IYF3 940 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 IGSF22Q8N9C0 903 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 CTNND2Q9UQB3 1225 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 UFL1O94874 794 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC175P0C221 793 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 ZNF397Q8NF99 534 aaPredicted RBP13.18□□□□□ -0.3
NPHP4-204ENST00000460696 TGFBRAP1Q8WUH2 860 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 VEZTQ9HBM0 779 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 RFX7Q2KHR2 1363 aa13.18□□□□□ -0.3
NPHP4-204ENST00000460696 PSMA7O14818 248 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CHRNA5P30532 468 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CACNA2D4Q7Z3S7 1137 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 RUFY1Q96T51 708 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 EXOC1Q9NV70 894 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 MON2Q7Z3U7 1717 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 IFNAR1P17181 557 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 SPAG1Q07617 926 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 SPA17Q15506 151 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 LONRF3Q496Y0 759 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC181Q5TID7 509 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC102AQ96A19 550 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 ZNF215Q9UL58 517 aaPredicted RBP13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CCDC144BQ3MJ40 725 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms