RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DDAH1O94760 285 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 PTPREP23469 700 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 NT5C2P49902 561 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 TPM4P67936 248 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 AKAP17AQ02040 695 aaKnown RBP17.35■□□□□ 0.37
LDLR-202ENST00000455727 FUT2Q10981 343 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 LRMPQ12912 555 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 SPTY2D1Q68D10 685 aaPredicted RBP17.35■□□□□ 0.37
LDLR-202ENST00000455727 LRRC8AQ8IWT6 810 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 CLIC6Q96NY7 704 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 USP21Q9UK80 565 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 CEP131Q9UPN4 1083 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 SBF2Q86WG5 1849 aa17.34■□□□□ 0.37
LDLR-202ENST00000455727 SMIM22K7EJ46 135 aa17.34■□□□□ 0.37
LDLR-202ENST00000455727 TROAPQ12815 778 aa17.34■□□□□ 0.37
LDLR-202ENST00000455727 CMTR1Q8N1G2 835 aaKnown RBP17.34■□□□□ 0.37
LDLR-202ENST00000455727 CCDC82Q8N4S0 544 aa17.34■□□□□ 0.37
LDLR-202ENST00000455727 NOL10Q9BSC4 688 aaKnown RBP17.34■□□□□ 0.37
LDLR-202ENST00000455727 DCP1AQ9NPI6 582 aaPredicted RBP17.34■□□□□ 0.37
LDLR-202ENST00000455727 TFCP2L1Q9NZI6 479 aa17.34■□□□□ 0.37
LDLR-202ENST00000455727 CYP2D7A0A087X1C5 515 aa17.33■□□□□ 0.37
LDLR-202ENST00000455727 HSP90AA2PQ14568 343 aaPredicted RBP17.33■□□□□ 0.37
LDLR-202ENST00000455727 KRBA2Q6ZNG9 492 aa17.33■□□□□ 0.37
LDLR-202ENST00000455727 IMPACTQ9P2X3 320 aa17.33■□□□□ 0.37
LDLR-202ENST00000455727 ARPP21Q9UBL0 812 aaPredicted RBP17.33■□□□□ 0.37
LDLR-202ENST00000455727 FBXO2Q9UK22 296 aaPredicted RBP17.33■□□□□ 0.37
LDLR-202ENST00000455727 SPATA31A6Q5VVP1 1343 aa17.33■□□□□ 0.36
LDLR-202ENST00000455727 UBAP1LF5GYI3 381 aa17.33■□□□□ 0.36
LDLR-202ENST00000455727 GTF2F1P35269 517 aaKnown RBP eCLIP17.33■□□□□ 0.362e-14■□□□□ 9.4
LDLR-202ENST00000455727 NCAPHQ15003 741 aa17.33■□□□□ 0.36
LDLR-202ENST00000455727 PKN1Q16512 942 aa17.33■□□□□ 0.36
LDLR-202ENST00000455727 TAOK2Q9UL54 1235 aa17.33■□□□□ 0.36
LDLR-202ENST00000455727 TNRC6CQ9HCJ0 1690 aaKnown RBP17.33■□□□□ 0.36
LDLR-202ENST00000455727 BIN1O00499 593 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 LONRF3Q496Y0 759 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 FBXW7Q969H0 707 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 AATFQ9NY61 560 aaKnown RBP eCLIP17.32■□□□□ 0.36
LDLR-202ENST00000455727 FAM13BQ9NYF5 915 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 HOOK1Q9UJC3 728 aaKnown RBP17.32■□□□□ 0.36
LDLR-202ENST00000455727 LEMD3Q9Y2U8 911 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 PRDX5P30044 214 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 GSDMDP57764 484 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 NR5A1Q13285 461 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 AMIGO3Q86WK7 504 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 CNNM3Q8NE01 707 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 PHF20Q9BVI0 1012 aa17.32■□□□□ 0.36
LDLR-202ENST00000455727 OSBPL5Q9H0X9 879 aaPredicted RBP17.32■□□□□ 0.36
LDLR-202ENST00000455727 SRPRBQ9Y5M8 271 aaKnown RBP17.32■□□□□ 0.36
LDLR-202ENST00000455727 RFC4P35249 363 aa17.31■□□□□ 0.36
LDLR-202ENST00000455727 DHX8Q14562 1220 aaKnown RBP17.31■□□□□ 0.36
LDLR-202ENST00000455727 TRAPPC3LQ5T215 181 aa17.31■□□□□ 0.36
LDLR-202ENST00000455727 METTL16Q86W50 562 aaKnown RBP17.31■□□□□ 0.36
LDLR-202ENST00000455727 PRDM1O75626 825 aa17.31■□□□□ 0.36
LDLR-202ENST00000455727 MDM2Q00987 491 aaPredicted RBP17.31■□□□□ 0.36
LDLR-202ENST00000455727 CHAF1AQ13111 956 aaPredicted RBP17.31■□□□□ 0.36
LDLR-202ENST00000455727 TXNRD3Q86VQ6 643 aa17.31■□□□□ 0.36
LDLR-202ENST00000455727 PCDHB6Q9Y5E3 794 aa17.31■□□□□ 0.36
LDLR-202ENST00000455727 MYO1BO43795 1136 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 PDE4BQ07343 736 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 GRAPQ13588 217 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 TMTC3Q6ZXV5 915 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 WDR66Q8TBY9 1149 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 GRAPLQ8TC17 118 aaPredicted RBP17.3■□□□□ 0.36
LDLR-202ENST00000455727 OXER1Q8TDS5 423 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 CABP5Q9NP86 173 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 KRT2P35908 639 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 PNOCQ13519 176 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 CCDC24Q8N4L8 307 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 SHISA4Q96DD7 197 aa17.3■□□□□ 0.36
LDLR-202ENST00000455727 V9GY48 417 aaPredicted RBP17.3■□□□□ 0.36
LDLR-202ENST00000455727 C15orf52Q6ZUT6 534 aaKnown RBP17.29■□□□□ 0.36
LDLR-202ENST00000455727 FOXP4Q8IVH2 680 aaPredicted RBP17.29■□□□□ 0.36
LDLR-202ENST00000455727 PLEKHA8P1O95397 391 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 BMP15O95972 392 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 ADRA2BP18089 450 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 NT5DC1Q5TFE4 455 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 KANK3Q6NY19 840 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 DZIP1Q86YF9 867 aaKnown RBP17.29■□□□□ 0.36
LDLR-202ENST00000455727 CTCFLQ8NI51 663 aaPredicted RBP17.29■□□□□ 0.36
LDLR-202ENST00000455727 XPO4Q9C0E2 1151 aaKnown RBP17.29■□□□□ 0.36
LDLR-202ENST00000455727 VPS54Q9P1Q0 977 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 PCDHA5Q9Y5H7 936 aa17.29■□□□□ 0.36
LDLR-202ENST00000455727 TRIM75PA6NK02 468 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 NPHP1O15259 732 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 MYL5Q02045 173 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 NFIXQ14938 502 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 OLFM4Q6UX06 510 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 BRMS1Q9HCU9 246 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 KCND1Q9NSA2 647 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 IFNKQ9P0W0 207 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 MKRN1Q9UHC7 482 aaKnown RBP17.28■□□□□ 0.36
LDLR-202ENST00000455727 XDHP47989 1333 aa17.28■□□□□ 0.36
LDLR-202ENST00000455727 FILIP1Q7Z7B0 1213 aa17.27■□□□□ 0.36
LDLR-202ENST00000455727 MAP7D2Q96T17 732 aa17.27■□□□□ 0.36
LDLR-202ENST00000455727 HSD3B7Q9H2F3 369 aa17.27■□□□□ 0.36
LDLR-202ENST00000455727 ANKIB1Q9P2G1 1089 aa17.27■□□□□ 0.36
LDLR-202ENST00000455727 CNTNAP5Q8WYK1 1306 aa17.27■□□□□ 0.36
LDLR-202ENST00000455727 ONECUT3O60422 494 aaPredicted RBP17.27■□□□□ 0.35
LDLR-202ENST00000455727 LDHBP07195 334 aaKnown RBP17.27■□□□□ 0.35
LDLR-202ENST00000455727 SKILP12757 684 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms