RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 MCCP23508 829 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 IREB2P48200 963 aaKnown RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 ARMC9Q7Z3E5 817 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 SLC44A5Q8NCS7 719 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 CNNM2Q9H8M5 875 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 MKNK2Q9HBH9 465 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 GBA2Q9HCG7 927 aaPredicted RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 GINM1Q9NU53 330 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 OTOFQ9HC10 1997 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 CTNND1O60716 968 aaKnown RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 RASA1P20936 1047 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 KRT32Q14532 448 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 CERKLQ49MI3 558 aaPredicted RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 C2orf69Q8N8R5 385 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 IL17RAQ96F46 866 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 ZNF408Q9H9D4 720 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 ANGEL1Q9UNK9 670 aaKnown RBP13.72□□□□□ -0.21
SCN9A-204ENST00000452182 TACC3Q9Y6A5 838 aa13.72□□□□□ -0.21
SCN9A-204ENST00000452182 ATAD5Q96QE3 1844 aa13.71□□□□□ -0.21
SCN9A-204ENST00000452182 DOCK1Q14185 1865 aa13.71□□□□□ -0.21
SCN9A-204ENST00000452182 GREB1LQ9C091 1923 aaPredicted RBP13.71□□□□□ -0.21
SCN9A-204ENST00000452182 E7EWF7 191 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 CAP2P40123 477 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 ANAPC15P60006 121 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 MAP3K9P80192 1104 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 NOL9Q5SY16 702 aaKnown RBP13.71□□□□□ -0.22
SCN9A-204ENST00000452182 LDLRAD1Q5T700 205 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 ANKRD13AQ8IZ07 590 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 RASEFQ8IZ41 740 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 ZNF444Q8N0Y2 327 aaPredicted RBP13.71□□□□□ -0.22
SCN9A-204ENST00000452182 WRNIP1Q96S55 665 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 KRT23Q9C075 422 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.22
SCN9A-204ENST00000452182 TAF6LQ9Y6J9 622 aa13.71□□□□□ -0.22
SCN9A-204ENST00000452182 PLIN4Q96Q06 1357 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 TRDNQ13061 729 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 PRKG1Q13976 671 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 TTLL12Q14166 644 aaPredicted RBP13.7□□□□□ -0.22
SCN9A-204ENST00000452182 RRP1BQ14684 758 aaKnown RBP13.7□□□□□ -0.22
SCN9A-204ENST00000452182 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.7□□□□□ -0.22
SCN9A-204ENST00000452182 STOX1Q6ZVD7 989 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 NCOA7Q8NI08 942 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 ESR2Q92731 530 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 FZD1Q9UP38 647 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 SNX14Q9Y5W7 946 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 NEDD4P46934 1319 aa13.7□□□□□ -0.22
SCN9A-204ENST00000452182 TMEM88BA6NKF7 163 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 PRDM1O75626 825 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 ASNSP08243 561 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 INPP5BP32019 993 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 RBM25P49756 843 aaKnown RBP13.69□□□□□ -0.22
SCN9A-204ENST00000452182 ABCB5Q2M3G0 1257 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 SCYL3Q8IZE3 742 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 STK11IPQ8N1F8 1099 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 INCENPQ9NQS7 918 aa13.69□□□□□ -0.22
SCN9A-204ENST00000452182 VGLL4Q14135 290 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TMEM179Q6ZVK1 233 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 MOB2Q70IA6 237 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 RALYLQ86SE5 291 aaKnown RBP13.68□□□□□ -0.22
SCN9A-204ENST00000452182 NEDD1Q8NHV4 660 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 ZKSCAN4Q969J2 545 aaPredicted RBP13.68□□□□□ -0.22
SCN9A-204ENST00000452182 C22orf23Q9BZE7 217 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 CABP5Q9NP86 173 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 CIZ1Q9ULV3 898 aaPredicted RBP13.68□□□□□ -0.22
SCN9A-204ENST00000452182 CSADQ9Y600 493 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TSPY2A6NKD2 308 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 UBE2Q2LH0YL09 131 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 RANBP6O60518 1105 aaKnown RBP13.68□□□□□ -0.22
SCN9A-204ENST00000452182 HMGB1P09429 215 aaKnown RBP13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TSPY3P0CV98 308 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TSPY8P0CW00 308 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 AKR1B1P15121 316 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 APLP1P51693 650 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TFAP4Q01664 338 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 SAPCD2Q86UD0 394 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 HHIPL1Q96JK4 782 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 NEK1Q96PY6 1258 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TM6SF1Q9BZW5 370 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TOMM22Q9NS69 142 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TCP11L1Q9NUJ3 509 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 ZBTB21Q9ULJ3 1066 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 TLL2Q9Y6L7 1015 aa13.68□□□□□ -0.22
SCN9A-204ENST00000452182 IGKV6D-41A0A0C4DH26 115 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 B4E1Z4 1266 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 KDM4AO75164 1064 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 GDF11O95390 407 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 GH2P01242 217 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 PSMA5P28066 241 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 JAG1P78504 1218 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 ADCK5Q3MIX3 580 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 RRP12Q5JTH9 1297 aaKnown RBP13.67□□□□□ -0.22
SCN9A-204ENST00000452182 PPP4R3BQ5MIZ7 849 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 MB21D2Q8IYB1 491 aaPredicted RBP13.67□□□□□ -0.22
SCN9A-204ENST00000452182 REM2Q8IYK8 340 aaPredicted RBP13.67□□□□□ -0.22
SCN9A-204ENST00000452182 MTA3Q9BTC8 594 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.67□□□□□ -0.22
SCN9A-204ENST00000452182 TBC1D2Q9BYX2 928 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 KANSL2Q9H9L4 492 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
SCN9A-204ENST00000452182 ZSWIM5Q9P217 1185 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms