RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 YEATS4O95619 227 aa13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 INTS5Q6P9B9 1019 aaKnown RBP13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 RFX7Q2KHR2 1363 aa13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 AMPD3Q01432 767 aa13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 PTPN14Q15678 1187 aa13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 PNMA1Q8ND90 353 aa13.16□□□□□ -0.3
TRAPPC9-202ENST00000438773 PIK3C2AO00443 1686 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 ELP1O95163 1332 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 BTBD18B2RXH4 712 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 U2AF2P26368 475 aaKnown RBP eCLIP13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 IBSPP21815 317 aaPredicted RBP13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 PTGS1P23219 599 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 GRM1Q13255 1194 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 LETM2Q2VYF4 491 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 KCNH3Q9ULD8 1083 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 FMN2Q9NZ56 1722 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 UBN2Q6ZU65 1347 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 RC3H1Q5TC82 1133 aaKnown RBP13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 DTHD1Q6ZMT9 781 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 CPLX3Q8WVH0 158 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 CNKSR1Q969H4 720 aa13.15□□□□□ -0.3
TRAPPC9-202ENST00000438773 URI1O94763 535 aaPredicted RBP13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 ZNF202O95125 648 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 NTSR2O95665 410 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 LRMPQ12912 555 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 TMEM87AQ8NBN3 555 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 INCENPQ9NQS7 918 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 HSP90B2PQ58FF3 399 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 TRMT1LQ7Z2T5 733 aaKnown RBP13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 KIAA1524Q8TCG1 905 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 ERCC4Q92889 916 aaPredicted RBP13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 FUCA2Q9BTY2 467 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 NR1I2O75469 434 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 PCP11498 1178 aaKnown RBP13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 GTF2F1P35269 517 aaKnown RBP eCLIP13.14□□□□□ -0.312e-7■■■■■ 33.7
TRAPPC9-202ENST00000438773 UBASH3AP57075 661 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 ZNF609O15014 1411 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 CARMIL3Q8ND23 1372 aa13.14□□□□□ -0.31
TRAPPC9-202ENST00000438773 CCDC66A2RUB6 948 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 SH2B2O14492 632 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 EN1Q05925 392 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 SF3B3Q15393 1217 aaKnown RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 RRAGBQ5VZM2 374 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 TMC4Q7Z404 712 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 IQUBQ8NA54 791 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 SUPT20HQ8NEM7 779 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 UBA5Q9GZZ9 404 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 SPTLC3Q9NUV7 552 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 CUTAO60888 179 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 TNIP1Q15025 636 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 TTC38Q5R3I4 469 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 TBC1D10CQ8IV04 446 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 NOSTRINQ8IVI9 506 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 FAM84BQ96KN1 310 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 PLIN2Q99541 437 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 DEF6Q9H4E7 631 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 POLR2DO15514 142 aaKnown RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 USP17L8P0C7I0 530 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 ARID4AP29374 1257 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 FAM193AP78312 1265 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 DBNDD1Q9H9R9 158 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 NRBP1Q9UHY1 535 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 KIF1AQ12756 1690 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 CASP7P55210 303 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 GSDMDP57764 484 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 ST3GAL1Q11201 340 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 ADALQ6DHV7 355 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 UBXN4Q92575 508 aa13.13□□□□□ -0.31
TRAPPC9-202ENST00000438773 CAMTA1Q9Y6Y1 1673 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 TRAF1Q13077 416 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 NAA30Q147X3 362 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 STOX1Q6ZVD7 989 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 RGPD8O14715 1765 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 LIFRP42702 1097 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 SLC1A4P43007 532 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 TSGA10IPQ3SY00 556 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 SLC27A3Q5K4L6 730 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 SMARCC2Q8TAQ2 1214 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 FTOQ9C0B1 505 aaKnown RBP eCLIP13.12□□□□□ -0.311e-10■■■■■ 27.2
TRAPPC9-202ENST00000438773 EHMT1Q9H9B1 1298 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 TAF6LQ9Y6J9 622 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 ABCC12Q96J65 1359 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 MRPL12P52815 198 aaKnown RBP13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 DMTNQ08495 405 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 JAKMIP3Q5VZ66 844 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 AIFM3Q96NN9 605 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 NFAT5O94916 1531 aa13.12□□□□□ -0.31
TRAPPC9-202ENST00000438773 STX17P56962 302 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 CCDC70Q6NSX1 233 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 ARHGAP27Q6ZUM4 889 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 RMND1Q9NWS8 449 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 AKAP12Q02952 1782 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 BCL9O00512 1426 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 SPDYE3A6NKU9 549 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 GOLGA8HP0CJ92 632 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 ASIC1P78348 528 aa13.11□□□□□ -0.31
TRAPPC9-202ENST00000438773 DLGAP5Q15398 846 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms