RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 SNX27Q96L92 541 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 CTAGE1Q96RT6 745 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 FUT8Q9BYC5 575 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 DYTNA2CJ06 578 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 EFCAB8A8MWE9 144 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 NDUFAB1O14561 156 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 MAP2K7O14733 419 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CYTH3O43739 400 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 PPP1R12BO60237 982 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 HSPA8P11142 646 aaKnown RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 GNAT1P11488 350 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 GNAI1P63096 354 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 ERCC6LQ2NKX8 1250 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CCDC93Q567U6 631 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 C11orf74Q86VG3 221 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 BPHLQ86WA6 291 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 THEMISQ8N1K5 641 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 LRRC43Q8N309 656 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 DCLK2Q8N568 766 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 ARL6IP6Q8N6S5 226 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 GPR161Q8N6U8 529 aaKnown RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 OXER1Q8TDS5 423 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CLIP3Q96DZ5 547 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CGREF1Q99674 301 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 PDGFDQ9GZP0 370 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 ALDH8A1Q9H2A2 487 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 IL20Q9NYY1 176 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CAPN7Q9Y6W3 813 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 ZNF644Q9H582 1327 aaPredicted RBP7.3□□□□□ -1.24
MCF2-205ENST00000437564 RB1CC1Q8TDY2 1594 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 SOGA1O94964 1423 aa7.3□□□□□ -1.24
MCF2-205ENST00000437564 CCDC162PA2VCL2 907 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PALM3A6NDB9 673 aaPredicted RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 TMEM247A6NEH6 219 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 DIAPH1O60610 1272 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 RASSF9O75901 435 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PDGFRBP09619 1106 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 ENDOUP21128 410 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 HOXD12P35452 270 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 KIF11P52732 1056 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PMS2P54278 862 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 EVA1CP58658 441 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 KCTD2Q14681 263 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 POTEEQ6S8J3 1075 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 BZW1Q7L1Q6 419 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 LUZP1Q86V48 1076 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PROSER2Q86WR7 435 aaPredicted RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 WDR75Q8IWA0 830 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 ESX1Q8N693 406 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TEX9Q8N6V9 391 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 KIAA1958Q8N8K9 716 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 SMC1BQ8NDV3 1235 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PPP1R14CQ8TAE6 165 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 SMARCC2Q8TAQ2 1214 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TMC2Q8TDI7 906 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 HPS3Q969F9 1004 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 ZNF653Q96CK0 615 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 OPTNQ96CV9 577 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 ANKRD27Q96NW4 1050 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 GALNT8Q9NY28 637 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 AATFQ9NY61 560 aaKnown RBP eCLIP7.29□□□□□ -1.24
MCF2-205ENST00000437564 VPS18Q9P253 973 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 XPO7Q9UIA9 1087 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 HOOK1Q9UJC3 728 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 NOSIPQ9Y314 301 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 KIF7Q2M1P5 1343 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 LINC00854A0A1B0GVQ3 168 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 IQCA1LA6NCM1 817 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 A6NHS1 94 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TTC34A8MYJ7 566 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 BIRC5O15392 142 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PLIN1O60240 522 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 SMIM24O75264 130 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 B3GALNT1O75752 331 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 ABL1P00519 1130 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TIE1P35590 1138 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 PTGER2P43116 358 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 NLRP5P59047 1200 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TUBA4AP68366 448 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 TUBB4BP68371 445 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 WHAMMP3Q1A5X7 153 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 RABL6Q3YEC7 729 aaPredicted RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 SH3D19Q5HYK7 790 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 CFAP58Q5T655 872 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 LURAP1LQ8IV03 231 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 MICALL2Q8IY33 904 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 RBM46Q8TBY0 533 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 HNRNPLLQ8WVV9 542 aaKnown RBP7.29□□□□□ -1.24
MCF2-205ENST00000437564 ATRIPQ8WXE1 791 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.29□□□□□ -1.24
MCF2-205ENST00000437564 ACSBG1Q96GR2 724 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 POM121Q96HA1 1249 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 NEK1Q96PY6 1258 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 USP26Q9BXU7 913 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 YIPF3Q9GZM5 350 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 KRT82Q9NSB4 513 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 IP6K2Q9UHH9 426 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 LZTS1Q9Y250 596 aa7.29□□□□□ -1.24
MCF2-205ENST00000437564 GOLGA6L7A0A1B0GV03 622 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 FRMD3A2A2Y4 597 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms