RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 INTS5Q6P9B9 1019 aaKnown RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 FOXP4Q8IVH2 680 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 LCORLQ8N3X6 602 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 GNL3LQ9NVN8 582 aaKnown RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 RBM28Q9NW13 759 aaKnown RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 AATFQ9NY61 560 aaKnown RBP eCLIP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 FAM53CQ9NYF3 392 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 NRAPQ86VF7 1730 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 KIAA1551Q9HCM1 1747 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 PDS5AQ29RF7 1337 aaKnown RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CAMTA2O94983 1202 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CBX1P83916 185 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 SMARCE1Q969G3 411 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 UBAC1Q9BSL1 405 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 BRIP1Q9BX63 1249 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 MAN1B1Q9UKM7 699 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 THRAP3Q9Y2W1 955 aaKnown RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 STX10O60499 249 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 NTSR2O95665 410 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 MYL10Q9BUA6 226 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 HSPA1LP34931 641 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 UBE4AQ14139 1066 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 HELBQ8NG08 1087 aaPredicted RBP15.64■□□□□ 0.09
COL6A3-207ENST00000433762 FERMT2Q96AC1 680 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 PYM1Q9BRP8 204 aaKnown RBP15.64■□□□□ 0.09
COL6A3-207ENST00000433762 FANCLQ9NW38 375 aa15.64■□□□□ 0.09
COL6A3-207ENST00000433762 MYH14Q7Z406 1995 aaKnown RBP15.63■□□□□ 0.09
COL6A3-207ENST00000433762 SEMA3EO15041 775 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 PRPF3O43395 683 aaKnown RBP15.63■□□□□ 0.09
COL6A3-207ENST00000433762 KIF20AO95235 890 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 TPM1P09493 284 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 CREBRFQ8IUR6 639 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 LRP2BPQ9P2M1 347 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.63■□□□□ 0.09
COL6A3-207ENST00000433762 MYH13Q9UKX3 1938 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 KAT6BQ8WYB5 2073 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 ACTN4O43707 911 aaKnown RBP15.63■□□□□ 0.09
COL6A3-207ENST00000433762 BMP6P22004 513 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 PLCD1P51178 756 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 CLEC4GQ6UXB4 293 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 TMEM139Q8IV31 216 aa15.63■□□□□ 0.09
COL6A3-207ENST00000433762 DDAH1O94760 285 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 H2AFXP16104 143 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-207ENST00000433762 GUCY1A2P33402 732 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 AKAP17AQ02040 695 aaKnown RBP15.62■□□□□ 0.09
COL6A3-207ENST00000433762 SPECC1LQ69YQ0 1117 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 DPF2Q92785 391 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 PKNOX2Q96KN3 472 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 DNAI1Q9UI46 699 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 ZNF652Q9Y2D9 606 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 TRIM75PA6NK02 468 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 PRKAB2O43741 272 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 CHRNDQ07001 517 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 TRIM65Q6PJ69 517 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 SYT10Q6XYQ8 523 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 PHF20Q9BVI0 1012 aa15.62■□□□□ 0.09
COL6A3-207ENST00000433762 MAGEB6P1A0A0J9YX57 407 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 POLR2DO15514 142 aaKnown RBP15.61■□□□□ 0.09
COL6A3-207ENST00000433762 CRKLP46109 303 aaKnown RBP15.61■□□□□ 0.09
COL6A3-207ENST00000433762 BCAMP50895 628 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 KMT5BQ4FZB7 885 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 SH3RF1Q7Z6J0 888 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 REXO1L1PQ8IX06 675 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 KRT222Q8N1A0 295 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 SEC31BQ9NQW1 1179 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 TNKSO95271 1327 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 CYP7A1P22680 504 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 KRT2P35908 639 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 FUT2Q10981 343 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 SF3B3Q15393 1217 aaKnown RBP15.61■□□□□ 0.09
COL6A3-207ENST00000433762 ARID3AQ99856 593 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 RIOK1Q9BRS2 568 aaKnown RBP15.61■□□□□ 0.09
COL6A3-207ENST00000433762 BRMS1Q9HCU9 246 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 INCENPQ9NQS7 918 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 INTS13Q9NVM9 706 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 SERTAD1Q9UHV2 236 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 NFE2L3Q9Y4A8 694 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 PCDHB6Q9Y5E3 794 aa15.61■□□□□ 0.09
COL6A3-207ENST00000433762 SLFN14P0C7P3 912 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 TRAPPC10P48553 1259 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 PDE4BQ07343 736 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 HOMER1Q86YM7 354 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 GSDMAQ96QA5 445 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 ZSCAN10Q96SZ4 725 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-207ENST00000433762 NAA15Q9BXJ9 866 aaKnown RBP15.6■□□□□ 0.09
COL6A3-207ENST00000433762 KCNJ14Q9UNX9 436 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 CCDC88AQ3V6T2 1871 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 A0A1B0GTH6 734 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 ELF2Q15723 593 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 RRP12Q5JTH9 1297 aaKnown RBP15.6■□□□□ 0.09
COL6A3-207ENST00000433762 FBXO38Q6PIJ6 1188 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 CATIPQ7Z7H3 387 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 PANX2Q96RD6 677 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 CTAGE1Q96RT6 745 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 BAG1Q99933 345 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-207ENST00000433762 TOMM22Q9NS69 142 aa15.6■□□□□ 0.09
COL6A3-207ENST00000433762 BAZ2AQ9UIF9 1905 aaKnown RBP15.59■□□□□ 0.09
COL6A3-207ENST00000433762 ORC4O43929 436 aa15.59■□□□□ 0.09
COL6A3-207ENST00000433762 NAA30Q147X3 362 aaPredicted RBP15.59■□□□□ 0.09
COL6A3-207ENST00000433762 PKN1Q16512 942 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms