RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 NAA25Q14CX7 972 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 BSPRYQ5W0U4 402 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 FAM184BQ9ULE4 1060 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 ANGEL1Q9UNK9 670 aaKnown RBP17.13■□□□□ 0.33
PTPRF-206ENST00000429895 KCNJ14Q9UNX9 436 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 APBA3O96018 575 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 TUBB4AP04350 444 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 SF3A3Q12874 501 aaKnown RBP eCLIP17.13■□□□□ 0.335e-9■■□□□ 12.7
PTPRF-206ENST00000429895 GTF3C6Q969F1 213 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 CCDC87Q9NVE4 849 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 TACC3Q9Y6A5 838 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 ABL1P00519 1130 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 PPP1R2P41236 205 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 TPH2Q8IWU9 490 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 NAPGQ99747 312 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-206ENST00000429895 TAB2Q9NYJ8 693 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 MAN1A1P33908 653 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 EVCP57679 992 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 SATB1Q01826 763 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 GKAP1Q5VSY0 366 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-206ENST00000429895 KLHL7Q8IXQ5 586 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 BLZF1Q9H2G9 400 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 ARHGAP44Q17R89 818 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 HDXQ7Z353 690 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 SPATA5Q8NB90 893 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 OTUD7AQ8TE49 926 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-206ENST00000429895 APPBP2Q92624 585 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 RIOK1Q9BRS2 568 aaKnown RBP17.12■□□□□ 0.33
PTPRF-206ENST00000429895 DLGAP5Q15398 846 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 C8orf34Q49A92 452 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 RABEP2Q9H5N1 569 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 MAP3K1Q13233 1512 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 MAP3K19Q56UN5 1328 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 PPIP5K2O43314 1243 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 GLG1Q92896 1179 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 MED10Q9BTT4 135 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 CARD10Q9BWT7 1032 aa17.12■□□□□ 0.33
PTPRF-206ENST00000429895 STAMQ92783 540 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 ACTN4O43707 911 aaKnown RBP17.11■□□□□ 0.33
PTPRF-206ENST00000429895 FAM173BQ6P4H8 233 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 DDX17Q92841 729 aaKnown RBP17.11■□□□□ 0.33
PTPRF-206ENST00000429895 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.11■□□□□ 0.334e-7■■□□□ 13.1
PTPRF-206ENST00000429895 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.11■□□□□ 0.33
PTPRF-206ENST00000429895 TNNI1P19237 187 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 PLEKHA4Q9H4M7 779 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 CEP104O60308 925 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 LACTBP83111 547 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-206ENST00000429895 IFRD2Q12894 506 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-206ENST00000429895 CABP7Q86V35 215 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 SUPT20HQ8NEM7 779 aa17.11■□□□□ 0.33
PTPRF-206ENST00000429895 CNGA1P29973 690 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 ZNF131P52739 623 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 LGR6Q9HBX8 967 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 ZNF532Q9HCE3 1301 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 IGSF3O75054 1194 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 HOOK2Q96ED9 719 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 KRT25Q7Z3Z0 450 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 SDCCAG8Q86SQ7 713 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-206ENST00000429895 ZBTB40Q9NUA8 1239 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 FAM102BQ5T8I3 360 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 SECISBP2LQ93073 1101 aaKnown RBP17.1■□□□□ 0.33
PTPRF-206ENST00000429895 USP40Q9NVE5 1235 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 BCS1LQ9Y276 419 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 HMGXB3Q12766 1538 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 TESPA1A2RU30 521 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-206ENST00000429895 TTC36A6NLP5 189 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 ZAP70P43403 619 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 TRIM14Q14142 442 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 TMCO4Q5TGY1 634 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 PPFIBP2Q8ND30 876 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 SUCLG2Q96I99 432 aa17.1■□□□□ 0.33
PTPRF-206ENST00000429895 LPIN2Q92539 896 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 ST7Q9NRC1 585 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 SNX14Q9Y5W7 946 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 ARID4AP29374 1257 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-206ENST00000429895 NEDD9Q14511 834 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 GLT8D2Q9H1C3 349 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 GTF2IP78347 998 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 TFAP4Q01664 338 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 ERCC6LQ2NKX8 1250 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 GABPB2Q8TAK5 448 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-206ENST00000429895 NELFBQ8WX92 580 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 FANCCQ00597 558 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 SLC9C1Q4G0N8 1177 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 ATL3Q6DD88 541 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 INTS4Q96HW7 963 aaKnown RBP17.09■□□□□ 0.33
PTPRF-206ENST00000429895 TRPC6Q9Y210 931 aa17.09■□□□□ 0.33
PTPRF-206ENST00000429895 FRMPD2Q68DX3 1309 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-206ENST00000429895 U2AF2P26368 475 aaKnown RBP eCLIP17.08■□□□□ 0.339e-12■■□□□ 11.6
PTPRF-206ENST00000429895 YARSP54577 528 aaKnown RBP17.08■□□□□ 0.33
PTPRF-206ENST00000429895 A2MP01023 1474 aa17.08■□□□□ 0.33
PTPRF-206ENST00000429895 GPR162Q16538 588 aa17.08■□□□□ 0.33
PTPRF-206ENST00000429895 CEP128Q6ZU80 1094 aa17.08■□□□□ 0.33
PTPRF-206ENST00000429895 AFAP1L2Q8N4X5 818 aa17.08■□□□□ 0.33
PTPRF-206ENST00000429895 PRPF31Q8WWY3 499 aaKnown RBP17.08■□□□□ 0.33
PTPRF-206ENST00000429895 CDCA7Q9BWT1 371 aaPredicted RBP17.08■□□□□ 0.33
PTPRF-206ENST00000429895 VPS54Q9P1Q0 977 aa17.08■□□□□ 0.33
PTPRF-206ENST00000429895 ARHGEF16Q5VV41 709 aa17.08■□□□□ 0.32
PTPRF-206ENST00000429895 MLXIPQ9HAP2 919 aa17.08■□□□□ 0.32
PTPRF-206ENST00000429895 A0A1W2PP64 1363 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms