RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RSPO4Q2I0M5 234 aaPredicted RBP6.58□□□□□ -1.36
USP40-204ENST00000427947 PRAMEF13Q5VWM6 474 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 SLC6A19Q695T7 634 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 SEZ6L2Q6UXD5 910 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 ARMCX6Q7L4S7 300 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 XAGE3Q8WTP9 111 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 CPLX3Q8WVH0 158 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 TBC1D32Q96NH3 1257 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 SRRTQ9BXP5 876 aaKnown RBP6.58□□□□□ -1.36
USP40-204ENST00000427947 ANTXR1Q9H6X2 564 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 GMIPQ9P107 970 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 PRKAG2Q9UGJ0 569 aa6.58□□□□□ -1.36
USP40-204ENST00000427947 LRIG2O94898 1065 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 SSBP05455 408 aaKnown RBP eCLIP6.57□□□□□ -1.36
USP40-204ENST00000427947 FGRP09769 529 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 IMPDH2P12268 514 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 CAP2P40123 477 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 NKAPLQ5M9Q1 402 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 OVOS1Q6IE37 1185 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 MCF2L2Q86YR7 1114 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 CRBNQ96SW2 442 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 FOXQ1Q9C009 403 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 TANGO6Q9C0B7 1094 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 C1GALT1Q9NS00 363 aa6.57□□□□□ -1.36
USP40-204ENST00000427947 SLC22A31A6NKX4 558 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 CHURC1-FNTBB4DL54 471 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 DYRK3O43781 588 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 CST3P01034 146 aaPredicted RBP6.56□□□□□ -1.36
USP40-204ENST00000427947 FURINP09958 794 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 EIF6P56537 245 aaKnown RBP6.56□□□□□ -1.36
USP40-204ENST00000427947 NFIAQ12857 509 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 LRRFIP1Q32MZ4 808 aaKnown RBP6.56□□□□□ -1.36
USP40-204ENST00000427947 ARSHQ5FYA8 562 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 RNF43Q68DV7 783 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 SLFN12Q8IYM2 578 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 FBXL6Q8N531 539 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 MFSD2AQ8NA29 543 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 TMEM40Q8WWA1 233 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 MFSD14AQ96MC6 490 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 PSMG3-AS1Q96PY0 264 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 GMLQ99445 158 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 STRIP2Q9ULQ0 834 aa6.56□□□□□ -1.36
USP40-204ENST00000427947 MEIS3P2A8K0S8 358 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 ADMP35318 185 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 ZAR1Q86SH2 424 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 LSRQ86X29 649 aaPredicted RBP6.55□□□□□ -1.36
USP40-204ENST00000427947 PHACTR4Q8IZ21 702 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 TOP6BLQ8N6T0 577 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 ANAPC16Q96DE5 110 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 MIPEPQ99797 713 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 PRDM10Q9NQV6 1147 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 MRVI1Q9Y6F6 885 aa6.55□□□□□ -1.36
USP40-204ENST00000427947 GSC2O15499 205 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 LEFTY1O75610 366 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 FAM87AP0C7U9 286 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 RAG1P15918 1043 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 FSTP19883 344 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 SF3A1Q15459 793 aaKnown RBP6.54□□□□□ -1.36
USP40-204ENST00000427947 NLRC3Q7RTR2 1065 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 SHISA5Q8N114 240 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 RBBP8NLQ8NC74 664 aaPredicted RBP6.54□□□□□ -1.36
USP40-204ENST00000427947 GIMAP7Q8NHV1 300 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 SREK1Q8WXA9 508 aaKnown RBP6.54□□□□□ -1.36
USP40-204ENST00000427947 GATA6Q92908 595 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 ATG4CQ96DT6 458 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 SHDQ96IW2 340 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 DBNDD2Q9BQY9 259 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 DUSP23Q9BVJ7 150 aa6.54□□□□□ -1.36
USP40-204ENST00000427947 FAM170BA6NMN3 283 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 SLITRK5O94991 958 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 IGLV1-40P01703 118 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 F13BP05160 661 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 NME1P15531 152 aaKnown RBP6.53□□□□□ -1.36
USP40-204ENST00000427947 ATP2B1P20020 1258 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 GIPRP48546 466 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 CDCP2Q5VXM1 449 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 LETMD1Q6P1Q0 360 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 RUFY4Q6ZNE9 571 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 ZNF765Q7L2R6 523 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 SHKBP1Q8TBC3 707 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 CYB5D2Q8WUJ1 264 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 CNNM2Q9H8M5 875 aa6.53□□□□□ -1.36
USP40-204ENST00000427947 FAM86C2PA6NEL3 165 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 WDR64B1ANS9 1081 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 POLR2BP30876 1174 aaKnown RBP6.52□□□□□ -1.37
USP40-204ENST00000427947 OGFOD3Q6PK18 319 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 CCDC74BQ96LY2 380 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 KIF2CQ99661 725 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 TM9SF2Q99805 663 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 ZNF408Q9H9D4 720 aa6.52□□□□□ -1.37
USP40-204ENST00000427947 PPP1R1BQ9UD71 204 aaPredicted RBP6.52□□□□□ -1.37
USP40-204ENST00000427947 GUCY2CP25092 1073 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 GBP1P32455 592 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 CYP27A1Q02318 531 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 CDH24Q86UP0 819 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 FAM169BQ8N8A8 192 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 OR6P1Q8NGX9 317 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 RIN3Q8TB24 985 aa6.51□□□□□ -1.37
USP40-204ENST00000427947 BAHD1Q8TBE0 780 aaPredicted RBP6.51□□□□□ -1.37
USP40-204ENST00000427947 OSBPL1AQ9BXW6 950 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms