RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PTPAQ15257 358 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 UTP14CQ5TAP6 766 aaKnown RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 RAD9BQ6WBX8 426 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 NUTM2AQ8IVF1 878 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 VSTM4Q8IW00 320 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 SPATA5Q8NB90 893 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 RIN2Q8WYP3 895 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 SYMPKQ92797 1274 aaKnown RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 PDE11AQ9HCR9 933 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 ZMYM6O95789 1325 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 GOLGA8HP0CJ92 632 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 IGDCC4Q8TDY8 1250 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 STRBPQ96SI9 672 aaKnown RBP9.85□□□□□ -0.83
USP40-203ENST00000427112 OSBPL5Q9H0X9 879 aaPredicted RBP9.85□□□□□ -0.83
USP40-203ENST00000427112 ARGLU1Q9NWB6 273 aaPredicted RBP9.85□□□□□ -0.83
USP40-203ENST00000427112 BTG4Q9NY30 223 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 GDAQ9Y2T3 454 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 AGLP35573 1532 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 A0A1W2PQ27 194 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 A0A1W2PQ64 194 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 A0A1W2PQD8 194 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 IL2RBP14784 551 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 DPYDQ12882 1025 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 FOXR1Q6PIV2 292 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 TMEM94Q12767 1356 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 SMC1AQ14683 1233 aaKnown RBP9.85□□□□□ -0.83
USP40-203ENST00000427112 NLRP10Q86W26 655 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 SLC35F6Q8N357 371 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 ANKRD13CQ8N6S4 541 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 TC2NQ8N9U0 490 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 SMARCAL1Q9NZC9 954 aa9.85□□□□□ -0.83
USP40-203ENST00000427112 SOS2Q07890 1332 aaPredicted RBP9.84□□□□□ -0.83
USP40-203ENST00000427112 CTSWP56202 376 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 MAP3K12Q12852 859 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 FBXO41Q8TF61 875 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 AATFQ9NY61 560 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP40-203ENST00000427112 KIF20AO95235 890 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 PDE8BO95263 885 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 KLRK1P26718 216 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 FXR1P51114 621 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP40-203ENST00000427112 ZNF654Q8IZM8 581 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 MAP3K14Q99558 947 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 CHP1Q99653 195 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 ALDH8A1Q9H2A2 487 aaPredicted RBP9.84□□□□□ -0.83
USP40-203ENST00000427112 LCMT1Q9UIC8 334 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 RIPOR2Q9Y4F9 1068 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 RGPD5Q99666 1765 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 TNKSO95271 1327 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 MACROD2A1Z1Q3 448 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 SPECC1LQ69YQ0 1117 aa9.84□□□□□ -0.83
USP40-203ENST00000427112 GSG1L2A8MUP6 293 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 H3BQF6 201 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 CBFA2T2O43439 604 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 TADA3O75528 432 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 CDKL5O76039 1030 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 CAVIN2O95810 425 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 KLK7P49862 253 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 IRX5P78411 483 aaPredicted RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 CYP27A1Q02318 531 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 RESP18Q5W5W9 173 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 SAMD1Q6SPF0 538 aaPredicted RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 SLC4A9Q96Q91 983 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 KANSL2Q9H9L4 492 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 CCDC66A2RUB6 948 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 STARD3NLO95772 234 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 NLRP5P59047 1200 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 CUL4BQ13620 913 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 NTRK3Q16288 839 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 AKNAD1Q5T1N1 836 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 SUSD4Q5VX71 490 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 PROCA1Q8NCQ7 364 aaPredicted RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 SMCR8Q8TEV9 937 aaPredicted RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 SHISA4Q96DD7 197 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 PNKPQ96T60 521 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 AGXT2Q9BYV1 514 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 HOOK1Q9UJC3 728 aaKnown RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 NIP7Q9Y221 180 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP40-203ENST00000427112 ZSCAN12O43309 604 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 PTGDRQ13258 359 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 ZBTB38Q8NAP3 1195 aaPredicted RBP9.83□□□□□ -0.84
USP40-203ENST00000427112 FANCBQ8NB91 859 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 ARFGAP3Q9NP61 516 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 NALCNQ8IZF0 1738 aa9.83□□□□□ -0.84
USP40-203ENST00000427112 USP17L12C9JPN9 530 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 USP17L21D6R901 530 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 CXCR5P32302 372 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 SART3Q15020 963 aaKnown RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 NOA1Q8NC60 698 aaKnown RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 GJA10Q969M2 543 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 SAP30BPQ9UHR5 308 aaKnown RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 AKR1B15C9JRZ8 316 aaPredicted RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 NKRFO15226 690 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP40-203ENST00000427112 ZFYP08048 801 aaPredicted RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 EIF6P56537 245 aaKnown RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 CHMP4BP1P59074 171 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 PPARAQ07869 468 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 RAD51AP2Q09MP3 1159 aa9.82□□□□□ -0.84
USP40-203ENST00000427112 IFIT1BQ5T764 474 aaKnown RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.82□□□□□ -0.84
USP40-203ENST00000427112 ATG3Q9NT62 314 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms