RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 CCDC82Q8N4S0 544 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 TBC1D16Q8TBP0 767 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 IGDCC4Q8TDY8 1250 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 ZNF592Q92610 1267 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 TMEM87BQ96K49 555 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 LY9Q9HBG7 655 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 LEMD3Q9Y2U8 911 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 COL1A1P02452 1464 aaPredicted RBP12.31□□□□□ -0.44
CUX1-205ENST00000425244 ARAP2Q8WZ64 1704 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 PATL2C9JE40 543 aaKnown RBP12.31□□□□□ -0.44
CUX1-205ENST00000425244 TNNT1P13805 278 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 AXDND1Q5T1B0 1012 aaPredicted RBP12.31□□□□□ -0.44
CUX1-205ENST00000425244 CCDC125Q86Z20 511 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 LRRC8AQ8IWT6 810 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 ZSWIM5Q9P217 1185 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 MYH7P12883 1935 aa12.31□□□□□ -0.44
CUX1-205ENST00000425244 RANBP6O60518 1105 aaKnown RBP12.3□□□□□ -0.44
CUX1-205ENST00000425244 PRDX5P30044 214 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 SLC39A14Q15043 492 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 DPP8Q6V1X1 898 aaPredicted RBP12.3□□□□□ -0.44
CUX1-205ENST00000425244 ZNF710Q8N1W2 664 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 LCORLQ8N3X6 602 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 ATP6V0A2Q9Y487 856 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 SLC4A4Q9Y6R1 1079 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 SKILP12757 684 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 CYP7A1P22680 504 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 CMA1P23946 247 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 GTF2F1P35269 517 aaKnown RBP eCLIP12.3□□□□□ -0.442e-8■■■□□ 18.7
CUX1-205ENST00000425244 SYKP43405 635 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 MFSD6Q6ZSS7 791 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 ZNF804AQ7Z570 1209 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 CLIC6Q96NY7 704 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 G3V3G9 751 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 DOK7Q18PE1 504 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 DCAF8Q5TAQ9 597 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 MTERF4Q7Z6M4 381 aaKnown RBP12.3□□□□□ -0.44
CUX1-205ENST00000425244 ADGRA1Q86SQ6 560 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 UPF1Q92900 1129 aaKnown RBP eCLIP12.3□□□□□ -0.44
CUX1-205ENST00000425244 TACC3Q9Y6A5 838 aa12.3□□□□□ -0.44
CUX1-205ENST00000425244 ATP2B4P23634 1241 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 BRD2P25440 801 aaKnown RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 SSRP1Q08945 709 aaKnown RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 AKNAD1Q5T1N1 836 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 SP8Q8IXZ3 490 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 CMTR1Q8N1G2 835 aaKnown RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 NACAP1Q9BZK3 213 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 COL11A2P13942 1736 aaPredicted RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 USP27XA6NNY8 438 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 GSG1L2A8MUP6 293 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 JMYQ8N9B5 988 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 NUP133Q8WUM0 1156 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 ZC3H12CQ9C0D7 883 aaKnown RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 FAM217BQ9NTX9 383 aaPredicted RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 TRMT1Q9NXH9 659 aaKnown RBP12.29□□□□□ -0.44
CUX1-205ENST00000425244 IFNKQ9P0W0 207 aa12.29□□□□□ -0.44
CUX1-205ENST00000425244 C21orf2O43822 256 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 NTRK3Q16288 839 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 NRXN2Q9P2S2 1712 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 MINDY4BA8MYZ0 360 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 LMOD1P29536 600 aaPredicted RBP12.28□□□□□ -0.44
CUX1-205ENST00000425244 GUCY1A2P33402 732 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 NLRP12P59046 1061 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 ALX1Q15699 326 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 SPECC1Q5M775 1068 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 SHC4Q6S5L8 630 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 SGMS1Q86VZ5 419 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 KRT23Q9C075 422 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 XPO4Q9C0E2 1151 aaKnown RBP12.28□□□□□ -0.44
CUX1-205ENST00000425244 CNNM2Q9H8M5 875 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 CD209Q9NNX6 404 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 KCNJ14Q9UNX9 436 aa12.28□□□□□ -0.44
CUX1-205ENST00000425244 ATP2B1P20020 1258 aa12.27□□□□□ -0.44
CUX1-205ENST00000425244 TPM4P67936 248 aa12.27□□□□□ -0.44
CUX1-205ENST00000425244 PNOCQ13519 176 aa12.27□□□□□ -0.44
CUX1-205ENST00000425244 WTAPQ15007 396 aa12.27□□□□□ -0.44
CUX1-205ENST00000425244 SART3Q15020 963 aaKnown RBP12.27□□□□□ -0.44
CUX1-205ENST00000425244 TMC6Q7Z403 805 aa12.27□□□□□ -0.44
CUX1-205ENST00000425244 DZIP1Q86YF9 867 aaKnown RBP12.27□□□□□ -0.44
CUX1-205ENST00000425244 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.27□□□□□ -0.44
CUX1-205ENST00000425244 MYH13Q9UKX3 1938 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 ERICH2A1L162 156 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 NEMFO60524 1076 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 LIFRP42702 1097 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 MECOMQ03112 1051 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 GRIK5Q16478 980 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 RTN1Q16799 776 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 SMAP1Q8IYB5 467 aaPredicted RBP12.27□□□□□ -0.45
CUX1-205ENST00000425244 SDR42E1Q8WUS8 393 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 DBNDD1Q9H9R9 158 aa12.27□□□□□ -0.45
CUX1-205ENST00000425244 IRS2Q9Y4H2 1338 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 BTBD18B2RXH4 712 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 F8W031 263 aaPredicted RBP12.26□□□□□ -0.45
CUX1-205ENST00000425244 DYNLL1P63167 89 aaKnown RBP12.26□□□□□ -0.45
CUX1-205ENST00000425244 GTF2IP78347 998 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 PTPAQ15257 358 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 SAFBQ15424 915 aaKnown RBP eCLIP12.26□□□□□ -0.45
CUX1-205ENST00000425244 SLC4A8Q2Y0W8 1093 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 TRIM22Q8IYM9 498 aa12.26□□□□□ -0.45
CUX1-205ENST00000425244 AATFQ9NY61 560 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■■ 27.8
CUX1-205ENST00000425244 SLX4Q8IY92 1834 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms