RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RPS12P25398 132 aaKnown RBP9.74□□□□□ -0.85
SYNE1-211ENST00000413186 RDXP35241 583 aaKnown RBP9.74□□□□□ -0.85
SYNE1-211ENST00000413186 MTA3Q9BTC8 594 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 V9GY48 417 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-211ENST00000413186 PRKG1Q13976 671 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 SCARF1Q14162 830 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 GPATCH4Q5T3I0 446 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 MCTP2Q6DN12 878 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 PCMTD1Q96MG8 357 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 LRRC27Q9C0I9 530 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 SEPT11Q9NVA2 429 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 TFIP11Q9UBB9 837 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 PALD1Q9ULE6 856 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 HDLBPQ00341 1268 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 GPS2Q13227 327 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 HHIPL2Q6UWX4 724 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 PAF1Q8N7H5 531 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 FANCBQ8NB91 859 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 NSUN4Q96CB9 384 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 ZHX3Q9H4I2 956 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 DDX19AQ9NUU7 478 aaKnown RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 AMPD3Q01432 767 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 NECTIN1Q15223 517 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 TMEM132AQ24JP5 1023 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 WWC2Q6AWC2 1192 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 KANK3Q6NY19 840 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 ARMC9Q7Z3E5 817 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 BCL2L12Q9HB09 334 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 PFKFB2O60825 505 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 TTLL1O95922 423 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 USP14P54578 494 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 IRX3P78415 501 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 GTF3C6Q969F1 213 aa9.73□□□□□ -0.85
SYNE1-211ENST00000413186 MAGEC2Q9UBF1 373 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-211ENST00000413186 ZYXQ15942 572 aaKnown RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 MAP3K11Q16584 847 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 RILPL1Q5EBL4 403 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 SH3RF3Q8TEJ3 882 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 KIF20AO95235 890 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 CAVIN2O95810 425 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 FGFR2P21802 821 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 FILIP1LQ4L180 1135 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 CCDC183Q5T5S1 534 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 RASEFQ8IZ41 740 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 FSIP1Q8NA03 581 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 AGBL3Q8NEM8 1001 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 TTC14Q96N46 770 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 SYT1P21579 422 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 IREB2P48200 963 aaKnown RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 UBE2HP62256 183 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 SLFN13Q68D06 897 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 RSBN1LQ6PCB5 846 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 CACNA1FO60840 1977 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 EPS15P42566 896 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 LIFRP42702 1097 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 GRM1Q13255 1194 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 ASPRV1Q53RT3 343 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 PPP4R3AQ6IN85 833 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 STAG1Q8WVM7 1258 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 CAMKK2Q96RR4 588 aa9.72□□□□□ -0.85
SYNE1-211ENST00000413186 TDRD3Q9H7E2 651 aaKnown RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 NCOA5Q9HCD5 579 aaKnown RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 DCP1AQ9NPI6 582 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-211ENST00000413186 STRCP1A6NGW2 1772 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 ZMYM6O95789 1325 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 ASNSP08243 561 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 LMNB1P20700 586 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 LRP10Q7Z4F1 713 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 ILDR1Q86SU0 546 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-211ENST00000413186 DGKHQ86XP1 1220 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 AKT1S1Q96B36 256 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 PDS5AQ29RF7 1337 aaKnown RBP9.71□□□□□ -0.85
SYNE1-211ENST00000413186 CDK8P49336 464 aa9.71□□□□□ -0.85
SYNE1-211ENST00000413186 LRRC37A3O60309 1634 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 IPO7O95373 1038 aaKnown RBP9.71□□□□□ -0.86
SYNE1-211ENST00000413186 TMEM179Q6ZVK1 233 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 KRT25Q7Z3Z0 450 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 MYL10Q9BUA6 226 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 SERPINA10Q9UK55 444 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 IVNS1ABPQ9Y6Y0 642 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 DLG5Q8TDM6 1919 aa9.71□□□□□ -0.86
SYNE1-211ENST00000413186 TBC1D10BQ4KMP7 808 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-211ENST00000413186 WDR19Q8NEZ3 1342 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 KLRF2D3W0D1 207 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 CCP110O43303 1012 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 ADCY7P51828 1080 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 CNNM3Q8NE01 707 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 CEP89Q96ST8 783 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 HERC5Q9UII4 1024 aaKnown RBP9.7□□□□□ -0.86
SYNE1-211ENST00000413186 LRP6O75581 1613 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 H0YHG0 523 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 GALNT17Q6IS24 598 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 DAGLAQ9Y4D2 1042 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 ENTPD3O75355 529 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 ME3Q16798 604 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 POLLQ9UGP5 575 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 SPTLC2O15270 562 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 KIF4BQ2VIQ3 1234 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 UVSSAQ2YD98 709 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 ADCK5Q3MIX3 580 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms