RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 GJA3Q9Y6H8 435 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 CNTNAP1P78357 1384 aa7.81□□□□□ -1.16
VPS41-204ENST00000413141 CLRN2A0PK11 232 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 DDTLA6NHG4 134 aaPredicted RBP7.8□□□□□ -1.16
VPS41-204ENST00000413141 CCDC69A6NI79 296 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 TSPY2A6NKD2 308 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 WNT10BO00744 389 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 RCAN1P53805 252 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 TCP10Q12799 353 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 NFXL1Q6ZNB6 911 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 SH3BP5LQ7L8J4 393 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 ZFPM1Q8IX07 1006 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 GPC2Q8N158 579 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 LLPHQ9BRT6 129 aaKnown RBP7.8□□□□□ -1.16
VPS41-204ENST00000413141 DHX36Q9H2U1 1008 aaKnown RBP7.8□□□□□ -1.16
VPS41-204ENST00000413141 DNAJC18Q9H819 358 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 MKNK2Q9HBH9 465 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 RNF181Q9P0P0 153 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 SWAP70Q9UH65 585 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 TAOK2Q9UL54 1235 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 NAP1L2Q9ULW6 460 aaPredicted RBP7.8□□□□□ -1.16
VPS41-204ENST00000413141 SMC3Q9UQE7 1217 aa7.8□□□□□ -1.16
VPS41-204ENST00000413141 UTRNP46939 3433 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 PTPDC1A2A3K4 754 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 GOLGA8AA7E2F4 631 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 TCP10L2B9ZVM9 353 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 SOCS7O14512 581 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 ZBTB43O43298 467 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 MYO1BO43795 1136 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 NMT2O60551 498 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 JAK2O60674 1132 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 CTDNEP1O95476 244 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 EGFRP00533 1210 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 TSPY3P0CV98 308 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 TSPY8P0CW00 308 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 GJB2P29033 226 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 SHMT1P34896 483 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 METAP2P50579 478 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS41-204ENST00000413141 CCT2P78371 535 aaKnown RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 TFAP4Q01664 338 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 PKP1Q13835 747 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 RAB3GAP1Q15042 981 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 KIF4BQ2VIQ3 1234 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 NBPF9Q3BBW0 867 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 IFIT1BQ5T764 474 aaKnown RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 FKBP1CQ5VVH2 108 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 MICU3Q86XE3 530 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 RAB11FIP4Q86YS3 637 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 ZNF654Q8IZM8 581 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 ZNF444Q8N0Y2 327 aaPredicted RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 TMTC2Q8N394 836 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 NSUN7Q8NE18 718 aaKnown RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 SMARCC2Q8TAQ2 1214 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 MYL10Q9BUA6 226 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 VEZTQ9HBM0 779 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 NCOA5Q9HCD5 579 aaKnown RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 IL17RBQ9NRM6 502 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 TCP11L1Q9NUJ3 509 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 PI4KBQ9UBF8 816 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 CNOT7Q9UIV1 285 aaKnown RBP7.79□□□□□ -1.16
VPS41-204ENST00000413141 SLC12A7Q9Y666 1083 aa7.79□□□□□ -1.16
VPS41-204ENST00000413141 DTNBO60941 627 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 DDAH1O94760 285 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 RXRAP19793 462 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 NUCB2P80303 420 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 TBC1D10BQ4KMP7 808 aaPredicted RBP7.78□□□□□ -1.16
VPS41-204ENST00000413141 CCDC178Q5BJE1 867 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 C9orf131Q5VYM1 1079 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 RCSD1Q6JBY9 416 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 SAMD7Q7Z3H4 446 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 FAM83AQ86UY5 434 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 METTL16Q86W50 562 aaKnown RBP7.78□□□□□ -1.16
VPS41-204ENST00000413141 DGKHQ86XP1 1220 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 ZSCAN29Q8IWY8 852 aaPredicted RBP7.78□□□□□ -1.16
VPS41-204ENST00000413141 CRACR2BQ8N4Y2 399 aaPredicted RBP7.78□□□□□ -1.16
VPS41-204ENST00000413141 NEDD1Q8NHV4 660 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 FAM151AQ8WW52 585 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 ANKS1AQ92625 1134 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 CHMP4CQ96CF2 233 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 CSRNP1Q96S65 589 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 GPRC5DQ9NZD1 345 aa7.78□□□□□ -1.16
VPS41-204ENST00000413141 ZC3H4Q9UPT8 1303 aaKnown RBP7.78□□□□□ -1.16
VPS41-204ENST00000413141 IGKV6D-41A0A0C4DH26 115 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 FAM196BA6NMK8 535 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 H7C1D1 291 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 DHX16O60231 1041 aaKnown RBP7.77□□□□□ -1.17
VPS41-204ENST00000413141 CDKL5O76039 1030 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 BRD1O95696 1058 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 SLURP2P0DP57 97 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 AKR1B1P15121 316 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 CDC27P30260 824 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 NOVP48745 357 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 HMGN5P82970 282 aaKnown RBP7.77□□□□□ -1.17
VPS41-204ENST00000413141 TROAPQ12815 778 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 TNFAIP1Q13829 316 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 GPR162Q16538 588 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 RTN1Q16799 776 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 TATDN1Q6P1N9 297 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 SYNE3Q6ZMZ3 975 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 CATIPQ7Z7H3 387 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms