RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 C12orf60Q5U649 245 aa17.44■□□□□ 0.38
GPC3-202ENST00000394299 ARPP21Q9UBL0 812 aaPredicted RBP17.44■□□□□ 0.38
GPC3-202ENST00000394299 MROH7-TTC4A0A0A0MT08 1334 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 A0A1W2PQ27 194 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 A0A1W2PQ64 194 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 A0A1W2PQD8 194 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 ORC4O43929 436 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 VEGFAP15692 232 aaPredicted RBP17.43■□□□□ 0.38
GPC3-202ENST00000394299 ZNF165P49910 485 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 SPECC1Q5M775 1068 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 C15orf52Q6ZUT6 534 aaKnown RBP17.43■□□□□ 0.38
GPC3-202ENST00000394299 NOSTRINQ8IVI9 506 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 SDF4Q9BRK5 362 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 BAZ2BQ9UIF8 2168 aaKnown RBP17.43■□□□□ 0.38
GPC3-202ENST00000394299 FAM205CA6NFA0 338 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 MSNP26038 577 aaKnown RBP17.43■□□□□ 0.38
GPC3-202ENST00000394299 TFAP4Q01664 338 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 RTFDC1Q9BY42 306 aaPredicted RBP17.43■□□□□ 0.38
GPC3-202ENST00000394299 CCDC39Q9UFE4 941 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 ECM29Q5VYK3 1845 aa17.43■□□□□ 0.38
GPC3-202ENST00000394299 KLRG2A4D1S0 409 aaPredicted RBP17.42■□□□□ 0.38
GPC3-202ENST00000394299 IL1R1P14778 569 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 PFKFB1P16118 471 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 BTDP43251 543 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 HS1BP3Q53T59 392 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 MFSD14BQ5SR56 506 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 RCSD1Q6JBY9 416 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 SHC4Q6S5L8 630 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 WASF1Q92558 559 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 AKT1S1Q96B36 256 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 CRAMP1Q96RY5 1269 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 IL17RBQ9NRM6 502 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 USP17L3A6NCW0 530 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 USP17L4A6NCW7 530 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 PPEF1O14829 653 aaPredicted RBP17.42■□□□□ 0.38
GPC3-202ENST00000394299 ZNF202O95125 648 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 RBM6P78332 1123 aaKnown RBP17.42■□□□□ 0.38
GPC3-202ENST00000394299 GRIN1Q05586 938 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 PDE4BQ07343 736 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 EARS2Q5JPH6 523 aaKnown RBP17.42■□□□□ 0.38
GPC3-202ENST00000394299 USP17L1Q7RTZ2 530 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 SRBD1Q8N5C6 995 aaKnown RBP17.42■□□□□ 0.38
GPC3-202ENST00000394299 SPC24Q8NBT2 197 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 MXD3Q9BW11 206 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 MTMR7Q9Y216 660 aa17.42■□□□□ 0.38
GPC3-202ENST00000394299 GTF2IP78347 998 aa17.41■□□□□ 0.38
GPC3-202ENST00000394299 NOM1Q5C9Z4 860 aaKnown RBP17.41■□□□□ 0.38
GPC3-202ENST00000394299 PODXL2Q9NZ53 605 aa17.41■□□□□ 0.38
GPC3-202ENST00000394299 F8W031 263 aaPredicted RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 BAG3O95817 575 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 TTC12Q9H892 705 aaPredicted RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 CABP5Q9NP86 173 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 ZKSCAN5Q9Y2L8 839 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 PCDHB6Q9Y5E3 794 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.4■□□□□ 0.38
GPC3-202ENST00000394299 SLC3A2P08195 630 aaKnown RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 MMP10P09238 476 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 PCP11498 1178 aaKnown RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 CMA1P23946 247 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 PPP4CP60510 307 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 AKAP17AQ02040 695 aaKnown RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 SAFBQ15424 915 aaKnown RBP eCLIP17.4■□□□□ 0.382e-8■■■□□ 15.8
GPC3-202ENST00000394299 RNF26Q9BY78 433 aaPredicted RBP17.4■□□□□ 0.38
GPC3-202ENST00000394299 CCDC88AQ3V6T2 1871 aa17.4■□□□□ 0.38
GPC3-202ENST00000394299 BIN1O00499 593 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 ADAMTS3O15072 1205 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 CTAGE5O15320 804 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 SRGNP10124 158 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 RCAN1P53805 252 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 GSTO1P78417 241 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 DOK7Q18PE1 504 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 ISM2Q6H9L7 571 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 KLHL34Q8N239 644 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 MKNK2Q9HBH9 465 aa17.39■□□□□ 0.38
GPC3-202ENST00000394299 TMTC3Q6ZXV5 915 aa17.39■□□□□ 0.37
GPC3-202ENST00000394299 SP8Q8IXZ3 490 aa17.39■□□□□ 0.37
GPC3-202ENST00000394299 NLGN1Q8N2Q7 840 aa17.39■□□□□ 0.37
GPC3-202ENST00000394299 RGS22Q8NE09 1264 aa17.39■□□□□ 0.37
GPC3-202ENST00000394299 PLSCR1O15162 318 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 PRPF3O43395 683 aaKnown RBP17.38■□□□□ 0.37
GPC3-202ENST00000394299 LDHCP07864 332 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 IQCB1Q15051 598 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 NOL10Q9BSC4 688 aaKnown RBP17.38■□□□□ 0.37
GPC3-202ENST00000394299 WNT7AO00755 349 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 PPP6R2O75170 966 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 RASGRP2Q7LDG7 609 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 TEX11Q8IYF3 940 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 STAG2Q8N3U4 1231 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 FOXP1Q9H334 677 aaPredicted RBP17.38■□□□□ 0.37
GPC3-202ENST00000394299 ATP6V0A2Q9Y487 856 aa17.38■□□□□ 0.37
GPC3-202ENST00000394299 GPR75-ASB3A0A0A6YYF3 556 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 ZBTB22O15209 634 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 RHBDL3P58872 404 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 UBE2Q2Q8WVN8 375 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 KIAA1551Q9HCM1 1747 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 DDAH1O94760 285 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 STX1AQ16623 288 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 CTCFLQ8NI51 663 aaPredicted RBP17.37■□□□□ 0.37
GPC3-202ENST00000394299 KIAA1468Q9P260 1216 aa17.37■□□□□ 0.37
GPC3-202ENST00000394299 CNTNAP5Q8WYK1 1306 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms