RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 USP17L3A6NCW0 530 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 USP17L4A6NCW7 530 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 MMP10P09238 476 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 USP17L1Q7RTZ2 530 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 ENAHQ8N8S7 591 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-201ENST00000379433 RNF217Q8TC41 542 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 RNF41Q9H4P4 317 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-201ENST00000379433 GGA1Q9UJY5 639 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 FAM205CA6NFA0 338 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 SPTLC2O15270 562 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 GOLGA8HP0CJ92 632 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 NDUFA8P51970 172 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 OXER1Q8TDS5 423 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 VAT1LQ9HCJ6 419 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 FAM217BQ9NTX9 383 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-201ENST00000379433 CDKL5O76039 1030 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 FANCBQ8NB91 859 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 PPP1R1BQ9UD71 204 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-201ENST00000379433 POLLQ9UGP5 575 aa12.45□□□□□ -0.42
NEDD9-201ENST00000379433 RBM5P52756 815 aaKnown RBP eCLIP12.44□□□□□ -0.421e-19■■■■■ 58.1
NEDD9-201ENST00000379433 KIF23Q02241 960 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-201ENST00000379433 ZNF804AQ7Z570 1209 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 CREBRFQ8IUR6 639 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 DIS3L2Q8IYB7 885 aaKnown RBP12.44□□□□□ -0.42
NEDD9-201ENST00000379433 ATL2Q8NHH9 583 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 CABP5Q9NP86 173 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 VEGFAP15692 232 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-201ENST00000379433 ZNF165P49910 485 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 TFAP4Q01664 338 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 CATIPQ7Z7H3 387 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 ZSCAN10Q96SZ4 725 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-201ENST00000379433 TRIM5Q9C035 493 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 DBNDD1Q9H9R9 158 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 SALL1Q9NSC2 1324 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 LAMA4Q16363 1823 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 CACNB3P54284 484 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 SAFBQ15424 915 aaKnown RBP eCLIP12.44□□□□□ -0.421e-6■■■■□ 20.1
NEDD9-201ENST00000379433 COL23A1Q86Y22 540 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-201ENST00000379433 STAG1Q8WVM7 1258 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 KCNQ5Q9NR82 932 aa12.44□□□□□ -0.42
NEDD9-201ENST00000379433 XDHP47989 1333 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 BECN2A8MW95 431 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 PLCD1P51178 756 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 DNAJC14Q6Y2X3 702 aaPredicted RBP12.43□□□□□ -0.42
NEDD9-201ENST00000379433 HOMER1Q86YM7 354 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 CLEC10AQ8IUN9 316 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 RBM17Q96I25 401 aaKnown RBP12.43□□□□□ -0.42
NEDD9-201ENST00000379433 ANKRD36CQ5JPF3 1778 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 BAZ2AQ9UIF9 1905 aaKnown RBP12.43□□□□□ -0.42
NEDD9-201ENST00000379433 AP5Z1O43299 807 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 PTPN21Q16825 1174 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 NOM1Q5C9Z4 860 aaKnown RBP12.43□□□□□ -0.42
NEDD9-201ENST00000379433 ANO1Q5XXA6 986 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 CD209Q9NNX6 404 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 BTAF1O14981 1849 aa12.43□□□□□ -0.42
NEDD9-201ENST00000379433 BTDP43251 543 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 DMTNQ08495 405 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 LINC00301Q8NCQ3 95 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 GPKOWQ92917 476 aaPredicted RBP eCLIP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 ZC3H12CQ9C0D7 883 aaKnown RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 PDGFDQ9GZP0 370 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 CBX8Q9HC52 389 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 NWD2Q9ULI1 1742 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 PNPLA7Q6ZV29 1317 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 WDHD1O75717 1129 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 LETM1O95202 739 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 TSPY3P0CV98 308 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 TSPY8P0CW00 308 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 CHRNA5P30532 468 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 GRIN1Q05586 938 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 TCP10Q12799 353 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 NTRK3Q16288 839 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 C11orf57Q6ZUT1 292 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 TEX11Q8IYF3 940 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 MRPS27Q92552 414 aaKnown RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 CLSTN2Q9H4D0 955 aa12.42□□□□□ -0.42
NEDD9-201ENST00000379433 DDX19AQ9NUU7 478 aaKnown RBP12.42□□□□□ -0.42
NEDD9-201ENST00000379433 GOLGA6L19H0YKK7 550 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 EN1Q05925 392 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-201ENST00000379433 ALX1Q15699 326 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 UIMC1Q96RL1 719 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 TMX4Q9H1E5 349 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-201ENST00000379433 RCOR1Q9UKL0 485 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 PCNTO95613 3336 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 FAM196BA6NMK8 535 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 PDE4BQ07343 736 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 ZNF444Q8N0Y2 327 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-201ENST00000379433 CTCFLQ8NI51 663 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-201ENST00000379433 RASGRP4Q8TDF6 673 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 GEMIN8Q9NWZ8 242 aaKnown RBP12.41□□□□□ -0.42
NEDD9-201ENST00000379433 ELP1O95163 1332 aa12.41□□□□□ -0.42
NEDD9-201ENST00000379433 ZSCAN30Q86W11 494 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 KIAA0825Q8IV33 1275 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 TBC1D16Q8TBP0 767 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 GPBP1L1Q9HC44 474 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-201ENST00000379433 RTL9Q8NET4 1388 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 PEX14O75381 377 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 KIF20AO95235 890 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 LIFRP42702 1097 aa12.4□□□□□ -0.42
NEDD9-201ENST00000379433 STAMQ92783 540 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms