RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TRIM50Q86XT4 487 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 TTC1Q99614 292 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 TUBB2BQ9BVA1 445 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 TRIM31Q9BZY9 425 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 KRT82Q9NSB4 513 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 RTEL1-TNFRSF6BF6WH68 1400 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 STX2P32856 288 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 MIS12Q9H081 205 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 SLC5A4Q9NY91 659 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 NUB1Q9Y5A7 615 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 PPFIA4O75335 1185 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 KRT19P08727 400 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 PLCD1P51178 756 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 ANLNQ9NQW6 1124 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 PTPN23Q9H3S7 1636 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 PRPF6O94906 941 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 BAG2O95816 211 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 ATXN8OSP0DMR3 200 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 YARSP54577 528 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 KHDRBS2Q5VWX1 349 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 FAM193BQ96PV7 902 aaPredicted RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 LARP6Q9BRS8 491 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 ZNF408Q9H9D4 720 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 HOMER3Q9NSC5 361 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 KLHL14Q9P2G3 628 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 KIF14Q15058 1648 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 PFDN1O60925 122 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 IFNB1P01574 187 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 MTMR3Q13615 1198 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 TAF11Q15544 211 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 ANO6Q4KMQ2 910 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 CYP26C1Q6V0L0 522 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 SND1Q7KZF4 910 aaKnown RBP eCLIP11.75□□□□□ -0.531e-9■■■■□ 22.5
RTN3-206ENST00000377819 NOC4LQ9BVI4 516 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 ST7Q9NRC1 585 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 MCM9Q9NXL9 1143 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 SCHIP1Q9P0W5 487 aaPredicted RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 NSFL1CQ9UNZ2 370 aaKnown RBP11.75□□□□□ -0.53
RTN3-206ENST00000377819 SCINQ9Y6U3 715 aa11.75□□□□□ -0.53
RTN3-206ENST00000377819 F8W8V4 182 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 ITKQ08881 620 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 EFHD1Q9BUP0 239 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 ARAP3Q8WWN8 1544 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 GNAT2P19087 354 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 FBXW4P57775 412 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 ZC3H12BQ5HYM0 836 aaKnown RBP11.74□□□□□ -0.53
RTN3-206ENST00000377819 SCYL1Q96KG9 808 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 STX1BP61266 288 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 ARHGEF6Q15052 776 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 STAG1Q8WVM7 1258 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 NBPF3Q9H094 633 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 MIS18AQ9NYP9 233 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 BCRP11274 1271 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 KRT71Q3SY84 523 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 TPTE2Q6XPS3 522 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 FCHSD1Q86WN1 690 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 PKD2L1Q9P0L9 805 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 PARP2Q9UGN5 583 aa11.74□□□□□ -0.53
RTN3-206ENST00000377819 CDV3Q9UKY7 258 aaKnown RBP11.74□□□□□ -0.53
RTN3-206ENST00000377819 RTL9Q8NET4 1388 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 TMEM247A6NEH6 219 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 SART1O43290 800 aaKnown RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 CEP104O60308 925 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 FLOT1O75955 427 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 LONP1P36776 959 aaKnown RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 PTK2BQ14289 1009 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 MCUQ8NE86 351 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 NEUROG2Q9H2A3 272 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 DACT1Q9NYF0 836 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 STK24Q9Y6E0 443 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 TBC1D8O95759 1140 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 PAK2Q13177 524 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 KLHL40Q2TBA0 621 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 IFNL2Q8IZJ0 200 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 TEX9Q8N6V9 391 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 TRIML1Q8N9V2 468 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 RSAD2Q8WXG1 361 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 LZICQ8WZA0 190 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 CEP19Q96LK0 163 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 POLR3CQ9BUI4 534 aaPredicted RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 HESX1Q9UBX0 185 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 IQSEC3Q9UPP2 1182 aaPredicted RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 COPG1Q9Y678 874 aaKnown RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 BZW2Q9Y6E2 419 aaKnown RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 SKIP12755 728 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 KRT2P35908 639 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 TRIM14Q14142 442 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 FAM47CQ5HY64 1035 aa11.73□□□□□ -0.53
RTN3-206ENST00000377819 PPWD1Q96BP3 646 aaKnown RBP11.73□□□□□ -0.53
RTN3-206ENST00000377819 NVLO15381 856 aaKnown RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 GCKP35557 465 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 GNL1P36915 607 aaPredicted RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 TMPOP42166 694 aaKnown RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 SLC9C2Q5TAH2 1124 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 SYCE1Q8N0S2 351 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 RNF169Q8NCN4 708 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 TRAIPQ9BWF2 469 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ARHGEF5Q12774 1597 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ZSCAN22P10073 491 aaPredicted RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 RAB44Q7Z6P3 723 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms