RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 RNF26Q9BY78 433 aaPredicted RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 XPO4Q9C0E2 1151 aaKnown RBP11.09□□□□□ -0.63
TRIM39-202ENST00000376659 PCDHB6Q9Y5E3 794 aa11.09□□□□□ -0.63
TRIM39-202ENST00000376659 SEMA3EO15041 775 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 NR5A1Q13285 461 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 CCDC93Q567U6 631 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 NOM1Q5C9Z4 860 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 MFSD6Q6ZSS7 791 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 FANCBQ8NB91 859 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 FAM53CQ9NYF3 392 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 ATP1A3P13637 1013 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 CCAR2Q8N163 923 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 ZKSCAN3Q9BRR0 538 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 SRPRBQ9Y5M8 271 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 KIF13BQ9NQT8 1826 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 CYP2D7A0A087X1C5 515 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 IFIT3O14879 490 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 NEMFO60524 1076 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 DEXIO95424 95 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 IGHMBP2P38935 993 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 SSRP1Q08945 709 aaKnown RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 TRDNQ13061 729 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 FNBP4Q8N3X1 1017 aaPredicted RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 SMARCC1Q92922 1105 aaPredicted RBP11.08□□□□□ -0.64
TRIM39-202ENST00000376659 MPHOSPH8Q99549 860 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 SLC26A6Q9BXS9 759 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 KCNJ14Q9UNX9 436 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 SLC12A7Q9Y666 1083 aa11.08□□□□□ -0.64
TRIM39-202ENST00000376659 TNS1Q9HBL0 1735 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 MYH4Q9Y623 1939 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 SLC3A2P08195 630 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 FMR1Q06787 632 aaKnown RBP eCLIP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 E2F4Q16254 413 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 IL17AQ16552 155 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 SBK1Q52WX2 424 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 ZSCAN10Q96SZ4 725 aaPredicted RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 NARFQ9UHQ1 456 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 CCDC69A6NI79 296 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 SMTNL1A8MU46 457 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 PRPF3O43395 683 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 PLEKHA8P1O95397 391 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 PCP11498 1178 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 MECOMQ03112 1051 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 WTAPQ15007 396 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 RTN1Q16799 776 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 TXNRD3Q86VQ6 643 aa11.07□□□□□ -0.64
TRIM39-202ENST00000376659 DIS3L2Q8IYB7 885 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 CMTR1Q8N1G2 835 aaKnown RBP11.07□□□□□ -0.64
TRIM39-202ENST00000376659 CPLX1O14810 134 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 SYKP43405 635 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 USP49Q70CQ1 688 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 C4orf32Q8N8J7 132 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 MAN1B1Q9UKM7 699 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 MAGEB6P1A0A0J9YX57 407 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 PBX1P40424 430 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 NOVP48745 357 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 TMED8Q6PL24 325 aaPredicted RBP11.06□□□□□ -0.64
TRIM39-202ENST00000376659 C15orf52Q6ZUT6 534 aaKnown RBP11.06□□□□□ -0.64
TRIM39-202ENST00000376659 TMTC3Q6ZXV5 915 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 ANKS1AQ92625 1134 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 MYO1BO43795 1136 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 CYP7A1P22680 504 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 GTF2E1P29083 439 aaPredicted RBP11.06□□□□□ -0.64
TRIM39-202ENST00000376659 CUL4BQ13620 913 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 KRI1Q8N9T8 703 aaKnown RBP11.06□□□□□ -0.64
TRIM39-202ENST00000376659 L2HGDHQ9H9P8 463 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 AATFQ9NY61 560 aaKnown RBP eCLIP11.06□□□□□ -0.64
TRIM39-202ENST00000376659 KCNH3Q9ULD8 1083 aa11.06□□□□□ -0.64
TRIM39-202ENST00000376659 DCP1AQ9NPI6 582 aaPredicted RBP11.05□□□□□ -0.64
TRIM39-202ENST00000376659 FAM177BA6PVY3 158 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 DDAH1O94760 285 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 VEGFAP15692 232 aaPredicted RBP11.05□□□□□ -0.64
TRIM39-202ENST00000376659 PPP2R5BQ15173 497 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 VSTM4Q8IW00 320 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 SRBD1Q8N5C6 995 aaKnown RBP11.05□□□□□ -0.64
TRIM39-202ENST00000376659 MTRQ99707 1265 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 TMEM232C9JQI7 657 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 RPS6KA4O75676 772 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 ADAMTS2O95450 1211 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 APPP05067 770 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 KCNQ4P56696 695 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 TRIM65Q6PJ69 517 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 ANKRD18AQ8IVF6 992 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 PPP1R13BQ96KQ4 1090 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 MAP7D2Q96T17 732 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 IL17RBQ9NRM6 502 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 IFNKQ9P0W0 207 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 SRP68Q9UHB9 627 aaKnown RBP11.05□□□□□ -0.64
TRIM39-202ENST00000376659 ZNF652Q9Y2D9 606 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 PCDHA5Q9Y5H7 936 aa11.05□□□□□ -0.64
TRIM39-202ENST00000376659 FECHP22830 423 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 FANCCQ00597 558 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 GRIK5Q16478 980 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 RILPL1Q5EBL4 403 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 TMTC2Q8N394 836 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 NAT10Q9H0A0 1025 aaKnown RBP11.04□□□□□ -0.64
TRIM39-202ENST00000376659 RNF41Q9H4P4 317 aaPredicted RBP11.04□□□□□ -0.64
TRIM39-202ENST00000376659 TDO2P48775 406 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 WASF1Q92558 559 aa11.04□□□□□ -0.64
TRIM39-202ENST00000376659 C16orf45Q96MC5 204 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms